Variant report

Variant	rs10828952
Chromosome Location	chr10:26400644-26400645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10741106	0.89[EUR][1000 genomes]
rs10764597	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828922	0.87[EUR][1000 genomes]
rs10828940	0.87[EUR][1000 genomes]
rs10828942	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10828943	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828947	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828948	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828960	0.84[EUR][1000 genomes]
rs11014937	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12218737	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268184	0.86[EUR][1000 genomes]
rs12413095	0.81[EUR][1000 genomes]
rs12573080	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779127	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1339817	0.84[EUR][1000 genomes]
rs1416859	0.84[EUR][1000 genomes]
rs1578217	0.87[EUR][1000 genomes]
rs1891382	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915477	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1976828	0.85[EUR][1000 genomes]
rs2096175	0.93[EUR][1000 genomes]
rs2105344	0.93[EUR][1000 genomes]
rs2153826	0.93[EUR][1000 genomes]
rs2368117	0.84[EUR][1000 genomes]
rs2368121	0.90[EUR][1000 genomes]
rs3818956	0.93[EUR][1000 genomes]
rs3824699	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4403709	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4568901	0.89[EUR][1000 genomes]
rs4747545	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749093	0.90[EUR][1000 genomes]
rs6482523	0.82[EUR][1000 genomes]
rs7084614	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898617	0.90[EUR][1000 genomes]
rs7904196	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908212	0.85[EUR][1000 genomes]
rs7910068	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7921616	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923691	0.83[EUR][1000 genomes]
rs982082	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26394400-26409800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26400400-26401600	Enhancers	NHDF-Ad	bronchial
3	chr10:26400600-26401000	Enhancers	Pancreatic Islets	Pancreatic Islet

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