Variant report

Variant	rs12268184
Chromosome Location	chr10:26364354-26364355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10741105	0.83[EUR][1000 genomes]
rs10764595	0.86[EUR][1000 genomes]
rs10764597	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828915	0.85[EUR][1000 genomes]
rs10828922	0.89[EUR][1000 genomes]
rs10828940	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828942	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828943	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828947	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828948	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10828952	0.86[EUR][1000 genomes]
rs11014937	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12218737	0.86[EUR][1000 genomes]
rs12241971	0.84[EUR][1000 genomes]
rs12413095	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12414462	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12415729	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12573080	0.87[EUR][1000 genomes]
rs12779127	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1339817	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1416859	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1578216	0.84[EUR][1000 genomes]
rs1578217	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1891382	0.87[EUR][1000 genomes]
rs1915477	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1976828	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2096175	0.82[EUR][1000 genomes]
rs2105344	0.82[EUR][1000 genomes]
rs2153826	0.82[EUR][1000 genomes]
rs2368117	0.87[EUR][1000 genomes]
rs2368121	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817420	0.81[AMR][1000 genomes]
rs3818956	0.82[EUR][1000 genomes]
rs3824699	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4403709	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747545	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749084	0.81[EUR][1000 genomes]
rs6482523	0.86[EUR][1000 genomes]
rs7074489	0.84[EUR][1000 genomes]
rs7077072	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7084614	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7904196	0.87[EUR][1000 genomes]
rs7904360	0.81[EUR][1000 genomes]
rs7910068	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7921616	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7923691	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3346593	chr10:26363746-26365794	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26362400-26368000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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