Variant report
| Variant | rs12415729 |
|---|---|
| Chromosome Location | chr10:26364998-26364999 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10764597 | 0.82[AMR][1000 genomes] |
| rs10828940 | 0.82[EUR][1000 genomes] |
| rs10828942 | 0.82[EUR][1000 genomes] |
| rs10828943 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10828947 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10828948 | 0.86[AMR][1000 genomes] |
| rs11014937 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12268184 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12413095 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12414462 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1578217 | 0.82[EUR][1000 genomes] |
| rs1915477 | 0.82[EUR][1000 genomes] |
| rs1976828 | 0.81[EUR][1000 genomes] |
| rs2368121 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3817420 | 0.82[AMR][1000 genomes] |
| rs3824699 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4403709 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4747545 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7084614 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7910068 | 0.82[AMR][1000 genomes] |
| rs7921616 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1792417 | chr10:26263695-26395038 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | esv3346593 | chr10:26363746-26365794 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26362400-26368000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
