Variant report

Variant	rs4403709
Chromosome Location	chr10:26360661-26360662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1033308	0.86[ASN][1000 genomes]
rs10741105	0.87[EUR][1000 genomes]
rs10741106	0.95[CEU][hapmap]
rs10741107	0.83[CEU][hapmap]
rs10764590	0.81[ASN][1000 genomes]
rs10764591	0.81[ASN][1000 genomes]
rs10764594	0.80[ASN][1000 genomes]
rs10764595	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828912	0.80[ASN][1000 genomes]
rs10828915	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828916	0.84[ASN][1000 genomes]
rs10828917	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10828922	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828927	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828928	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828940	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828942	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828948	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828952	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014850	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014851	0.80[ASN][1000 genomes]
rs11014913	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs11014937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218737	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12241971	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12253015	0.81[YRI][hapmap]
rs12260321	0.83[YRI][hapmap]
rs12263561	0.81[YRI][hapmap]
rs12267071	0.81[YRI][hapmap]
rs12268184	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12413095	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414462	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12415729	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12570908	0.82[ASN][1000 genomes]
rs12570917	0.80[ASN][1000 genomes]
rs12573080	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12765561	0.83[YRI][hapmap]
rs12766929	0.81[YRI][hapmap]
rs12767114	0.81[YRI][hapmap]
rs12768879	0.81[YRI][hapmap]
rs12777444	0.84[ASN][1000 genomes]
rs12779127	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1339804	0.82[ASN][1000 genomes]
rs1339817	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1416855	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416859	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1416862	0.86[ASN][1000 genomes]
rs1474216	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1538645	0.83[ASN][1000 genomes]
rs1578216	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1578217	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1851146	0.87[ASN][1000 genomes]
rs1891382	0.94[CEU][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1915477	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1976828	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2027356	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2096175	0.83[EUR][1000 genomes]
rs2105344	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2153345	0.82[ASN][1000 genomes]
rs2153826	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2204023	0.88[ASN][1000 genomes]
rs2368117	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2368118	0.85[ASN][1000 genomes]
rs2368121	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2947353	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs3737275	0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs3758450	0.80[ASN][1000 genomes]
rs3817420	0.89[ASN][1000 genomes]
rs3818956	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs3824699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4328138	0.80[ASN][1000 genomes]
rs4378287	0.83[YRI][hapmap]
rs4503431	0.80[ASN][1000 genomes]
rs4568901	0.94[CEU][hapmap]
rs4581344	0.80[YRI][hapmap]
rs4747545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749084	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749093	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs6482520	0.82[ASN][1000 genomes]
rs6482523	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482524	0.84[ASN][1000 genomes]
rs7068085	0.82[ASN][1000 genomes]
rs7069921	0.80[ASN][1000 genomes]
rs7071420	0.80[ASN][1000 genomes]
rs7071526	0.80[ASN][1000 genomes]
rs7073804	0.80[ASN][1000 genomes]
rs7074489	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7077072	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084310	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7084483	0.81[YRI][hapmap]
rs7084614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095668	0.81[YRI][hapmap]
rs7100134	0.90[ASN][1000 genomes]
rs7100527	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7898617	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs7904196	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7904360	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7905199	0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7908158	0.84[ASN][1000 genomes]
rs7908742	0.86[ASN][1000 genomes]
rs7910068	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7914361	0.88[ASN][1000 genomes]
rs7914935	0.89[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7918880	0.80[ASN][1000 genomes]
rs7921616	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7923264	0.86[ASN][1000 genomes]
rs7923691	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8181447	0.81[ASN][1000 genomes]
rs9664363	0.84[ASN][1000 genomes]
rs982082	0.90[JPT][hapmap]
rs993397	0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs993398	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv13963	chr10:26345494-26361303	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26358600-26362400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26358800-26361000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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