Variant report

Variant	rs1339804
Chromosome Location	chr10:26202724-26202725
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10741103	0.95[ASN][1000 genomes]
rs10741105	0.88[ASN][1000 genomes]
rs10764588	0.92[ASN][1000 genomes]
rs10764589	0.90[ASN][1000 genomes]
rs10764590	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10764591	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10764594	0.94[ASN][1000 genomes]
rs10764595	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10764597	0.94[CHB][hapmap]
rs10828897	0.92[ASN][1000 genomes]
rs10828907	0.96[ASN][1000 genomes]
rs10828912	0.94[ASN][1000 genomes]
rs10828913	0.93[ASN][1000 genomes]
rs10828915	0.96[ASN][1000 genomes]
rs10828916	0.89[ASN][1000 genomes]
rs10828917	0.82[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10828922	0.91[ASN][1000 genomes]
rs10828927	0.83[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828928	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828940	0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10828942	0.84[ASN][1000 genomes]
rs10828943	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs10828947	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs10828948	0.94[CHB][hapmap]
rs11014850	0.98[ASN][1000 genomes]
rs11014851	0.96[ASN][1000 genomes]
rs11014863	0.92[ASN][1000 genomes]
rs11014913	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs11014937	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs12241971	0.98[ASN][1000 genomes]
rs12570908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12570917	0.96[ASN][1000 genomes]
rs12777444	0.89[ASN][1000 genomes]
rs12779127	0.84[ASN][1000 genomes]
rs1339805	0.80[ASN][1000 genomes]
rs1339817	0.94[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1416855	0.88[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1416859	0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1416862	0.91[ASN][1000 genomes]
rs1416863	0.81[ASN][1000 genomes]
rs1474216	0.82[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1538645	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1578216	0.93[ASN][1000 genomes]
rs1578217	0.84[ASN][1000 genomes]
rs1851146	0.86[ASN][1000 genomes]
rs1915477	0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1976828	0.84[ASN][1000 genomes]
rs2027356	0.83[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2153345	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2204023	0.88[ASN][1000 genomes]
rs2367988	0.91[ASN][1000 genomes]
rs2368116	0.95[ASN][1000 genomes]
rs2368117	0.91[ASN][1000 genomes]
rs2947353	0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs3006270	0.90[ASN][1000 genomes]
rs3737275	0.82[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3758450	0.94[ASN][1000 genomes]
rs3824699	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs4328138	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4403709	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs4503431	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4747545	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs4749082	0.84[ASN][1000 genomes]
rs4749083	0.95[ASN][1000 genomes]
rs4749084	0.96[ASN][1000 genomes]
rs4749085	0.81[ASN][1000 genomes]
rs6482520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482523	0.93[ASN][1000 genomes]
rs6482524	0.93[ASN][1000 genomes]
rs7068085	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069921	0.94[ASN][1000 genomes]
rs7071420	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7071526	0.94[ASN][1000 genomes]
rs7073804	0.94[ASN][1000 genomes]
rs7074489	0.96[ASN][1000 genomes]
rs7077072	0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7083201	0.90[ASN][1000 genomes]
rs7084310	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7084614	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs7100118	0.92[ASN][1000 genomes]
rs7100134	0.88[ASN][1000 genomes]
rs7100527	0.98[ASN][1000 genomes]
rs7896398	0.93[ASN][1000 genomes]
rs7904360	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7905199	0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7908158	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7908742	0.91[ASN][1000 genomes]
rs7914361	0.88[ASN][1000 genomes]
rs7914935	0.87[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7918880	0.94[ASN][1000 genomes]
rs7920650	0.94[ASN][1000 genomes]
rs7921074	0.90[ASN][1000 genomes]
rs7923264	0.91[ASN][1000 genomes]
rs7923691	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs8181447	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9299814	0.91[ASN][1000 genomes]
rs9645527	0.92[ASN][1000 genomes]
rs9663248	0.97[ASN][1000 genomes]
rs9664363	0.89[ASN][1000 genomes]
rs9665611	0.94[ASN][1000 genomes]
rs9731571	0.84[ASN][1000 genomes]
rs993397	0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs993398	0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26199600-26205600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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