Variant report

Variant	rs1851146
Chromosome Location	chr10:26302619-26302620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1033308	0.80[ASN][1000 genomes]
rs10741103	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10741105	0.85[ASN][1000 genomes]
rs10764588	0.82[ASN][1000 genomes]
rs10764589	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764590	0.88[ASN][1000 genomes]
rs10764591	0.88[ASN][1000 genomes]
rs10764594	0.88[ASN][1000 genomes]
rs10764595	0.91[ASN][1000 genomes]
rs10764597	0.84[ASN][1000 genomes]
rs10828897	0.82[ASN][1000 genomes]
rs10828907	0.87[ASN][1000 genomes]
rs10828912	0.88[ASN][1000 genomes]
rs10828913	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828915	0.88[ASN][1000 genomes]
rs10828916	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828917	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828922	0.91[ASN][1000 genomes]
rs10828927	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828928	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828940	0.92[ASN][1000 genomes]
rs10828942	0.90[ASN][1000 genomes]
rs10828943	0.88[ASN][1000 genomes]
rs10828947	0.87[ASN][1000 genomes]
rs10828948	0.85[ASN][1000 genomes]
rs11014850	0.87[ASN][1000 genomes]
rs11014851	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014863	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014913	0.97[ASN][1000 genomes]
rs11014937	0.87[ASN][1000 genomes]
rs12241971	0.87[ASN][1000 genomes]
rs12413095	0.81[ASN][1000 genomes]
rs12570908	0.86[ASN][1000 genomes]
rs12570917	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12777444	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12779127	0.91[ASN][1000 genomes]
rs1339804	0.86[ASN][1000 genomes]
rs1339817	0.96[ASN][1000 genomes]
rs1416855	0.93[ASN][1000 genomes]
rs1416859	0.92[ASN][1000 genomes]
rs1416862	0.93[ASN][1000 genomes]
rs1416863	0.82[ASN][1000 genomes]
rs1474216	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1538645	0.87[ASN][1000 genomes]
rs1578216	0.91[ASN][1000 genomes]
rs1578217	0.91[ASN][1000 genomes]
rs1915477	0.90[ASN][1000 genomes]
rs1976828	0.91[ASN][1000 genomes]
rs2027356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153345	0.88[ASN][1000 genomes]
rs2204023	0.96[ASN][1000 genomes]
rs2367988	0.82[ASN][1000 genomes]
rs2368116	0.86[ASN][1000 genomes]
rs2368117	0.91[ASN][1000 genomes]
rs2368118	0.82[ASN][1000 genomes]
rs2368121	0.88[ASN][1000 genomes]
rs2947353	0.85[ASN][1000 genomes]
rs3006270	0.82[ASN][1000 genomes]
rs3737275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758450	0.88[ASN][1000 genomes]
rs3824699	0.87[ASN][1000 genomes]
rs4328138	0.87[ASN][1000 genomes]
rs4403709	0.87[ASN][1000 genomes]
rs4503431	0.87[ASN][1000 genomes]
rs4747545	0.86[ASN][1000 genomes]
rs4749083	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4749084	0.88[ASN][1000 genomes]
rs6482520	0.88[ASN][1000 genomes]
rs6482523	0.91[ASN][1000 genomes]
rs6482524	0.91[ASN][1000 genomes]
rs7068085	0.87[ASN][1000 genomes]
rs7069921	0.88[ASN][1000 genomes]
rs7071420	0.87[ASN][1000 genomes]
rs7071526	0.88[ASN][1000 genomes]
rs7073804	0.88[ASN][1000 genomes]
rs7074489	0.88[ASN][1000 genomes]
rs7077072	0.92[ASN][1000 genomes]
rs7083201	0.83[ASN][1000 genomes]
rs7084310	0.88[ASN][1000 genomes]
rs7084614	0.87[ASN][1000 genomes]
rs7098645	0.80[ASN][1000 genomes]
rs7100118	0.82[ASN][1000 genomes]
rs7100134	0.97[ASN][1000 genomes]
rs7100527	0.86[ASN][1000 genomes]
rs7896398	0.82[ASN][1000 genomes]
rs7904360	0.87[ASN][1000 genomes]
rs7905199	0.96[ASN][1000 genomes]
rs7908158	0.88[ASN][1000 genomes]
rs7908742	0.93[ASN][1000 genomes]
rs7914361	0.96[ASN][1000 genomes]
rs7914935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918880	0.88[ASN][1000 genomes]
rs7920650	0.84[ASN][1000 genomes]
rs7921074	0.83[ASN][1000 genomes]
rs7923264	0.93[ASN][1000 genomes]
rs7923691	0.92[ASN][1000 genomes]
rs8181447	0.88[ASN][1000 genomes]
rs9299814	0.84[ASN][1000 genomes]
rs9645527	0.82[ASN][1000 genomes]
rs9663248	0.86[ASN][1000 genomes]
rs9664363	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9665611	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9731571	0.86[ASN][1000 genomes]
rs993397	0.96[ASN][1000 genomes]
rs993398	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26300400-26305400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:26302400-26310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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