Variant report

Variant	rs10828915
Chromosome Location	chr10:26223835-26223836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26222827-26224029	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr10:26223811-26224167	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
3	MAX	chr10:26222970-26224104	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr10:26223732-26224115	A549	lung:	n/a	chr10:26223972-26223990
5	CTCF	chr10:26223706-26224110	Medullo	brain:	n/a	chr10:26223972-26223990
6	RAD21	chr10:26223717-26224172	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
7	HDAC2	chr10:26223777-26224164	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr10:26223709-26224169	H1-neurons	neurons:	n/a	n/a
9	CTCF	chr10:26223758-26224130	H1-hESC	embryonic stem cell:	n/a	chr10:26223972-26223990
10	CTCF	chr10:26223780-26223930	GM12868	blood:	n/a	n/a
11	E2F6	chr10:26222926-26224162	H1-hESC	embryonic stem cell:	n/a	chr10:26223487-26223494 chr10:26223306-26223316 chr10:26223245-26223257 chr10:26223487-26223494 chr10:26223487-26223494 chr10:26223575-26223584
12	CHD2	chr10:26223789-26224126	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr10:26223780-26223930	HAc	cerebellar:	n/a	n/a
14	ZNF143	chr10:26223822-26224022	GM12878	blood:	n/a	n/a
15	CTCF	chr10:26223700-26223850	A549	lung:	n/a	n/a
16	CTCF	chr10:26223755-26224104	K562	blood:	n/a	chr10:26223972-26223990
17	CTCF	chr10:26223821-26224110	GM19238	blood:	n/a	chr10:26223972-26223990
18	SIN3A	chr10:26223757-26223990	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr10:26223754-26224139	K562	blood:	n/a	chr10:26223972-26223990
20	BACH1	chr10:26222706-26224176	H1-hESC	embryonic stem cell:	n/a	n/a
21	CEBPB	chr10:26223796-26224039	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr10:26223824-26224102	GM12891	blood:	n/a	chr10:26223972-26223990
23	RAD21	chr10:26223697-26224224	H1-hESC	embryonic stem cell:	n/a	chr10:26223971-26223984
24	CTCF	chr10:26223692-26224357	A549	lung:	n/a	chr10:26223972-26223990
25	E2F6	chr10:26222750-26224177	H1-hESC	embryonic stem cell:	n/a	chr10:26223487-26223494 chr10:26223306-26223316 chr10:26223245-26223257 chr10:26223487-26223494 chr10:26223487-26223494 chr10:26223575-26223584
26	KAP1	chr10:26223811-26224206	U2OS	brain:	n/a	chr10:26224148-26224156
27	TBP	chr10:26222527-26224042	H1-hESC	embryonic stem cell:	n/a	n/a
28	ZNF143	chr10:26223661-26224113	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr10:26223763-26223988	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr10:26223619-26223950	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr10:26223822-26224130	GM12878	blood:	n/a	chr10:26223972-26223990
32	MAX	chr10:26223477-26224043	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr10:26223820-26223970	NHEK	skin:	n/a	n/a
34	CTCF	chr10:26223800-26223950	GM12866	blood:	n/a	n/a
35	ZNF263	chr10:26222628-26224162	HEK293-T-REx	kidney:	n/a	chr10:26223905-26223914 chr10:26223543-26223552 chr10:26223831-26223852
36	MAX	chr10:26223702-26224260	A549	lung:	n/a	n/a
37	CTCF	chr10:26223800-26223950	BE2_C	brain:	n/a	n/a
38	HMGN3	chr10:26223835-26224153	K562	blood:	n/a	n/a
39	MAX	chr10:26222909-26224094	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
MYO3A	TF binding region
ENSG00000226304	TF binding region

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10741103	0.93[ASN][1000 genomes]
rs10741105	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764588	0.90[ASN][1000 genomes]
rs10764589	0.88[ASN][1000 genomes]
rs10764590	0.95[ASN][1000 genomes]
rs10764591	0.95[ASN][1000 genomes]
rs10764594	0.97[ASN][1000 genomes]
rs10764595	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764597	0.83[EUR][1000 genomes]
rs10828897	0.90[ASN][1000 genomes]
rs10828907	0.94[ASN][1000 genomes]
rs10828912	0.97[ASN][1000 genomes]
rs10828913	0.96[ASN][1000 genomes]
rs10828916	0.93[ASN][1000 genomes]
rs10828917	0.93[ASN][1000 genomes]
rs10828922	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828927	0.91[ASN][1000 genomes]
rs10828928	0.91[ASN][1000 genomes]
rs10828940	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828942	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828943	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828947	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828948	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014850	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014851	0.94[ASN][1000 genomes]
rs11014863	0.95[ASN][1000 genomes]
rs11014913	0.91[ASN][1000 genomes]
rs11014937	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12241971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12268184	0.85[EUR][1000 genomes]
rs12570908	0.96[ASN][1000 genomes]
rs12570917	0.94[ASN][1000 genomes]
rs12777444	0.93[ASN][1000 genomes]
rs12779127	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1339804	0.96[ASN][1000 genomes]
rs1339805	0.88[EUR][1000 genomes]
rs1339817	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1416855	0.96[ASN][1000 genomes]
rs1416859	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1416862	0.96[ASN][1000 genomes]
rs1416863	0.86[ASN][1000 genomes]
rs1474216	0.95[ASN][1000 genomes]
rs1538645	0.97[ASN][1000 genomes]
rs1578216	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1578217	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1851146	0.88[ASN][1000 genomes]
rs1915477	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1976828	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2027356	0.89[ASN][1000 genomes]
rs2153345	0.99[ASN][1000 genomes]
rs2204023	0.93[ASN][1000 genomes]
rs2367988	0.90[ASN][1000 genomes]
rs2368116	0.93[ASN][1000 genomes]
rs2368117	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368121	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2947353	0.92[ASN][1000 genomes]
rs3006270	0.93[ASN][1000 genomes]
rs3737275	0.89[ASN][1000 genomes]
rs3758450	0.97[ASN][1000 genomes]
rs3824699	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4328138	0.94[ASN][1000 genomes]
rs4403709	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4503431	0.94[ASN][1000 genomes]
rs4747545	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749082	0.82[ASN][1000 genomes]
rs4749083	0.93[ASN][1000 genomes]
rs4749084	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749085	0.84[ASN][1000 genomes]
rs6482520	0.99[ASN][1000 genomes]
rs6482523	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482524	0.97[ASN][1000 genomes]
rs7068085	0.98[ASN][1000 genomes]
rs7069921	0.97[ASN][1000 genomes]
rs7071420	0.94[ASN][1000 genomes]
rs7071526	0.97[ASN][1000 genomes]
rs7073804	0.97[ASN][1000 genomes]
rs7074489	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7077072	0.88[ASN][1000 genomes]
rs7083201	0.88[ASN][1000 genomes]
rs7084310	0.97[ASN][1000 genomes]
rs7084614	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7100118	0.90[ASN][1000 genomes]
rs7100134	0.91[ASN][1000 genomes]
rs7100527	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896398	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7904360	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7905199	0.93[ASN][1000 genomes]
rs7908158	0.98[ASN][1000 genomes]
rs7908742	0.96[ASN][1000 genomes]
rs7910068	0.84[EUR][1000 genomes]
rs7914361	0.93[ASN][1000 genomes]
rs7914935	0.88[ASN][1000 genomes]
rs7918880	0.97[ASN][1000 genomes]
rs7920650	0.93[ASN][1000 genomes]
rs7921074	0.88[ASN][1000 genomes]
rs7923264	0.96[ASN][1000 genomes]
rs7923691	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8181447	0.95[ASN][1000 genomes]
rs9299814	0.89[ASN][1000 genomes]
rs9645527	0.90[ASN][1000 genomes]
rs9663248	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9664363	0.93[ASN][1000 genomes]
rs9665611	0.93[ASN][1000 genomes]
rs9731571	0.89[ASN][1000 genomes]
rs993397	0.93[ASN][1000 genomes]
rs993398	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26222400-26224000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:26222400-26224200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr10:26222400-26224200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:26222400-26224800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:26222400-26228000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr10:26222600-26224200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr10:26222600-26224200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:26222600-26224200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:26222600-26224200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:26222600-26224200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
11	chr10:26222600-26224400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:26222800-26224000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:26222800-26224000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:26222800-26224000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr10:26222800-26224000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:26222800-26224000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:26222800-26224000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr10:26222800-26224000	Bivalent Enhancer	Placenta	Placenta
19	chr10:26222800-26224000	Active TSS	Pancreas	Pancrea
20	chr10:26222800-26224000	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr10:26222800-26224000	Active TSS	Right Atrium	heart
22	chr10:26222800-26224200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:26222800-26224200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
24	chr10:26222800-26224200	Active TSS	Brain Anterior Caudate	brain
25	chr10:26222800-26224200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:26222800-26224200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:26222800-26224200	Bivalent Enhancer	Fetal Brain Male	brain
28	chr10:26223000-26224000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr10:26223000-26224000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:26223000-26224000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:26223000-26224000	Active TSS	Aorta	Aorta
32	chr10:26223000-26224000	Bivalent/Poised TSS	Colonic Mucosa	Colon
33	chr10:26223000-26224000	Bivalent/Poised TSS	Fetal Thymus	thymus
34	chr10:26223000-26224200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:26223000-26224200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:26223000-26224200	Active TSS	Placenta Amnion	Placenta Amnion
37	chr10:26223000-26224200	Bivalent/Poised TSS	Thymus	Thymus
38	chr10:26223000-26224200	Bivalent/Poised TSS	A549	lung
39	chr10:26223000-26224400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:26223000-26224400	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr10:26223000-26224400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:26223200-26224000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:26223200-26224000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
44	chr10:26223200-26224000	Bivalent/Poised TSS	Esophagus	oesophagus
45	chr10:26223200-26224000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
46	chr10:26223200-26224200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
47	chr10:26223200-26224200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:26223200-26224200	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr10:26223200-26224200	Bivalent/Poised TSS	NH-A	brain
50	chr10:26223400-26224000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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