Variant report

Variant	rs3006270
Chromosome Location	chr10:26215202-26215203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABI1-5	chr10:26213307-26215945	NONHSAT011817

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1033308	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10741103	0.88[ASN][1000 genomes]
rs10741105	0.86[ASN][1000 genomes]
rs10764588	0.85[ASN][1000 genomes]
rs10764589	0.83[ASN][1000 genomes]
rs10764590	0.90[ASN][1000 genomes]
rs10764591	0.90[ASN][1000 genomes]
rs10764594	0.92[ASN][1000 genomes]
rs10764595	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828897	0.85[ASN][1000 genomes]
rs10828907	0.89[ASN][1000 genomes]
rs10828912	0.92[ASN][1000 genomes]
rs10828913	0.91[ASN][1000 genomes]
rs10828915	0.93[ASN][1000 genomes]
rs10828916	0.87[ASN][1000 genomes]
rs10828917	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10828922	0.88[ASN][1000 genomes]
rs10828927	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10828928	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10828940	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014850	0.92[ASN][1000 genomes]
rs11014851	0.89[ASN][1000 genomes]
rs11014863	0.90[ASN][1000 genomes]
rs11014913	0.85[ASN][1000 genomes]
rs12241971	0.92[ASN][1000 genomes]
rs12570908	0.91[ASN][1000 genomes]
rs12570917	0.89[ASN][1000 genomes]
rs12777444	0.87[ASN][1000 genomes]
rs1339804	0.90[ASN][1000 genomes]
rs1339817	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416855	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1416859	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1416862	0.89[ASN][1000 genomes]
rs1416863	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1474216	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1538645	0.92[ASN][1000 genomes]
rs1578216	0.91[ASN][1000 genomes]
rs1851146	0.82[ASN][1000 genomes]
rs1915477	0.84[JPT][hapmap]
rs2027356	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2153345	0.94[ASN][1000 genomes]
rs2204023	0.86[ASN][1000 genomes]
rs2367988	0.85[ASN][1000 genomes]
rs2368116	0.88[ASN][1000 genomes]
rs2368117	0.89[ASN][1000 genomes]
rs2368118	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2947353	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737275	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3758450	0.92[ASN][1000 genomes]
rs4328138	0.89[ASN][1000 genomes]
rs4503431	0.89[ASN][1000 genomes]
rs4517423	1.00[CEU][hapmap]
rs4747545	0.81[JPT][hapmap]
rs4749082	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4749083	0.88[ASN][1000 genomes]
rs4749084	0.94[ASN][1000 genomes]
rs6482520	0.94[ASN][1000 genomes]
rs6482523	0.91[ASN][1000 genomes]
rs6482524	0.91[ASN][1000 genomes]
rs7068085	0.93[ASN][1000 genomes]
rs7069921	0.92[ASN][1000 genomes]
rs7071420	0.89[ASN][1000 genomes]
rs7071526	0.92[ASN][1000 genomes]
rs7073804	0.92[ASN][1000 genomes]
rs7074489	0.94[ASN][1000 genomes]
rs7077072	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7083201	0.83[ASN][1000 genomes]
rs7084310	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7100118	0.85[ASN][1000 genomes]
rs7100134	0.85[ASN][1000 genomes]
rs7100527	0.91[ASN][1000 genomes]
rs7896398	0.87[ASN][1000 genomes]
rs7904360	0.92[ASN][1000 genomes]
rs7905199	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7908158	0.93[ASN][1000 genomes]
rs7908742	0.89[ASN][1000 genomes]
rs7914361	0.86[ASN][1000 genomes]
rs7914935	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7918880	0.92[ASN][1000 genomes]
rs7920650	0.87[ASN][1000 genomes]
rs7921074	0.83[ASN][1000 genomes]
rs7923264	0.89[ASN][1000 genomes]
rs7923691	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs8181447	0.90[ASN][1000 genomes]
rs9299814	0.84[ASN][1000 genomes]
rs9645527	0.85[ASN][1000 genomes]
rs9663248	0.90[ASN][1000 genomes]
rs9664363	0.87[ASN][1000 genomes]
rs9665611	0.88[ASN][1000 genomes]
rs9731571	0.83[ASN][1000 genomes]
rs982082	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs993397	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs993398	0.94[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26214200-26215400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26214200-26215400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:26214200-26215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:26214400-26215400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:26214400-26215600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:26214400-26215800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:26214800-26215400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:26215000-26215600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr10:26215000-26215800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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