Variant report

Variant	rs2368118
Chromosome Location	chr10:26316914-26316915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1033308	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828927	0.81[ASN][1000 genomes]
rs10828928	0.81[ASN][1000 genomes]
rs10828940	0.89[ASN][1000 genomes]
rs10828942	0.86[ASN][1000 genomes]
rs10828943	0.85[ASN][1000 genomes]
rs10828947	0.85[ASN][1000 genomes]
rs10828948	0.81[ASN][1000 genomes]
rs11014913	0.84[ASN][1000 genomes]
rs11014937	0.85[ASN][1000 genomes]
rs12779127	0.87[ASN][1000 genomes]
rs1339817	0.85[ASN][1000 genomes]
rs1416855	0.80[ASN][1000 genomes]
rs1416859	0.89[ASN][1000 genomes]
rs1416862	0.80[ASN][1000 genomes]
rs1416863	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578217	0.87[ASN][1000 genomes]
rs1851146	0.82[ASN][1000 genomes]
rs1915477	0.86[ASN][1000 genomes]
rs1976828	0.87[ASN][1000 genomes]
rs2027356	0.82[ASN][1000 genomes]
rs2204023	0.83[ASN][1000 genomes]
rs2368117	0.80[ASN][1000 genomes]
rs2368121	0.82[ASN][1000 genomes]
rs2947353	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3006270	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3737275	0.82[ASN][1000 genomes]
rs3824699	0.85[ASN][1000 genomes]
rs4403709	0.85[ASN][1000 genomes]
rs4747545	0.84[ASN][1000 genomes]
rs7077072	0.89[ASN][1000 genomes]
rs7084614	0.85[ASN][1000 genomes]
rs7100134	0.84[ASN][1000 genomes]
rs7905199	0.83[ASN][1000 genomes]
rs7908742	0.80[ASN][1000 genomes]
rs7914361	0.83[ASN][1000 genomes]
rs7914935	0.81[ASN][1000 genomes]
rs7923264	0.80[ASN][1000 genomes]
rs7923691	0.81[ASN][1000 genomes]
rs993397	0.83[ASN][1000 genomes]
rs993398	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26313400-26320200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26314800-26317400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26315000-26317000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26315200-26318200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26315200-26318600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:26315200-26318800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:26315200-26318800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:26315200-26326400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:26315400-26318200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:26315400-26318400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:26315400-26318600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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