Variant report

Variant	rs12573080
Chromosome Location	chr10:26393354-26393355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10741106	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10741107	0.89[CEU][hapmap]
rs10764595	0.90[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs10764597	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828917	0.82[JPT][hapmap]
rs10828922	0.87[EUR][1000 genomes]
rs10828927	0.80[JPT][hapmap]
rs10828940	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs10828942	0.88[EUR][1000 genomes]
rs10828943	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828947	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828948	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828952	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828960	0.85[EUR][1000 genomes]
rs11014913	0.90[GIH][hapmap]
rs11014937	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12218737	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268184	0.87[EUR][1000 genomes]
rs12413095	0.82[EUR][1000 genomes]
rs12779127	0.85[EUR][1000 genomes]
rs1339817	0.90[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs1416855	0.86[JPT][hapmap]
rs1416859	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs1474216	0.82[JPT][hapmap]
rs1578216	0.80[EUR][1000 genomes]
rs1578217	0.87[EUR][1000 genomes]
rs1888252	0.97[GIH][hapmap]
rs1891382	1.00[CEU][hapmap];0.85[CHB][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915477	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1976828	0.86[EUR][1000 genomes]
rs1999240	0.97[GIH][hapmap]
rs2027356	0.82[JPT][hapmap]
rs2096175	0.93[EUR][1000 genomes]
rs2105344	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs2153826	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs2368117	0.85[EUR][1000 genomes]
rs2368121	0.91[EUR][1000 genomes]
rs2947353	0.82[JPT][hapmap]
rs3737275	0.82[GIH][hapmap];0.82[JPT][hapmap]
rs3818956	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs3824699	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4403709	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4568901	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs4747545	0.94[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749093	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6482523	0.82[EUR][1000 genomes]
rs7077072	0.82[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs7084614	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898617	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7904196	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7905199	0.82[JPT][hapmap]
rs7908212	0.85[EUR][1000 genomes]
rs7910068	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914935	0.81[JPT][hapmap]
rs7921616	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923691	0.90[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs982082	0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs993397	0.97[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs993398	0.97[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26391000-26393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26392800-26400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26393000-26394400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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