Variant report

Variant	rs1888252
Chromosome Location	chr10:26460246-26460247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10741106	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10764597	0.95[GIH][hapmap]
rs10828948	0.97[GIH][hapmap]
rs10828959	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828960	0.84[ASN][1000 genomes]
rs11014913	0.88[GIH][hapmap]
rs11014980	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12573080	0.97[GIH][hapmap]
rs1330575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339817	0.95[GIH][hapmap]
rs1999240	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000253	0.86[ASN][1000 genomes]
rs2096175	0.91[ASN][1000 genomes]
rs2105344	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2153826	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3818956	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3824699	0.97[GIH][hapmap]
rs4568901	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4749093	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7077072	0.95[GIH][hapmap]
rs7084614	0.97[GIH][hapmap]
rs7898617	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7908212	0.83[ASN][1000 genomes]
rs993397	0.95[GIH][hapmap]
rs993398	0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26456600-26461600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:26456800-26461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:26456800-26461800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:26458400-26461600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:26458600-26460600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:26459200-26460800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:26459200-26460800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:26459800-26460800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:26460200-26460600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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