Variant report

Variant	rs11014980
Chromosome Location	chr10:26453823-26453824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10741106	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1330575	0.86[ASN][1000 genomes]
rs1888252	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1999240	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2096175	0.85[ASN][1000 genomes]
rs2105344	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2153826	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3818956	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4517423	1.00[CEU][hapmap]
rs4568901	0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4749093	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7898617	0.87[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs982082	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26449400-26455200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26451200-26456600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:26451600-26456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26451800-26454200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26452000-26456800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:26452000-26456800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:26452200-26456600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:26453200-26454200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:26453800-26457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:26453800-26458400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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