Variant report

Variant	rs4749093
Chromosome Location	chr10:26452144-26452145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10741106	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741107	0.89[CEU][hapmap]
rs10764597	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10828940	0.95[CEU][hapmap]
rs10828943	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs10828947	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs10828948	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10828952	0.90[EUR][1000 genomes]
rs10828960	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014980	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12218737	0.92[EUR][1000 genomes]
rs12573080	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1330575	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1339817	0.90[CEU][hapmap]
rs1416859	0.95[CEU][hapmap]
rs17667121	0.82[CHB][hapmap]
rs1888252	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1891382	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1915477	0.95[CEU][hapmap]
rs1999240	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2000253	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2096175	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2105344	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153826	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2368121	0.82[EUR][1000 genomes]
rs3818956	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824699	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs4403709	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs4568901	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747545	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4749097	0.82[CHB][hapmap]
rs7084614	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7898617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7904196	0.90[EUR][1000 genomes]
rs7908212	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7910068	0.90[EUR][1000 genomes]
rs7921616	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26447000-26453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:26449400-26455200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26450400-26452200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26451200-26456600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:26451600-26452400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:26451600-26456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:26451800-26454200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:26452000-26453400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:26452000-26456800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:26452000-26456800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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