Variant report

Variant	rs2105344
Chromosome Location	chr10:26439067-26439068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10741106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741107	0.89[CEU][hapmap]
rs10764597	0.95[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs10828922	0.82[EUR][1000 genomes]
rs10828940	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs10828942	0.82[EUR][1000 genomes]
rs10828943	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10828947	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10828948	0.89[CEU][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs10828952	0.93[EUR][1000 genomes]
rs10828960	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014913	0.88[GIH][hapmap]
rs11014937	0.83[EUR][1000 genomes]
rs11014980	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12218737	0.95[EUR][1000 genomes]
rs12268184	0.82[EUR][1000 genomes]
rs12573080	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs1330575	0.93[ASN][1000 genomes]
rs1339817	0.90[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap]
rs1416859	0.94[CEU][hapmap]
rs1578217	0.82[EUR][1000 genomes]
rs17667121	0.83[CHB][hapmap]
rs1888252	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1891382	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1915477	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs1976828	0.81[EUR][1000 genomes]
rs1999240	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2000253	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2096175	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368121	0.86[EUR][1000 genomes]
rs3818956	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824699	0.95[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs4403709	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4568901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747545	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4749093	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4749097	0.83[CHB][hapmap]
rs7077072	0.95[GIH][hapmap]
rs7084614	0.87[ASW][hapmap];0.95[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs7898617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904196	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7908212	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7910068	0.94[EUR][1000 genomes]
rs7921616	0.92[EUR][1000 genomes]
rs7923691	0.90[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap]
rs993397	0.95[GIH][hapmap];0.84[TSI][hapmap]
rs993398	0.95[GIH][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26436600-26439400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26438000-26451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26439000-26439600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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