Variant report

Variant	rs7921616
Chromosome Location	chr10:26391400-26391401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10741106	0.88[EUR][1000 genomes]
rs10764595	0.81[EUR][1000 genomes]
rs10764597	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828922	0.85[EUR][1000 genomes]
rs10828940	0.85[EUR][1000 genomes]
rs10828942	0.84[EUR][1000 genomes]
rs10828943	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10828947	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828948	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828952	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828960	0.82[EUR][1000 genomes]
rs11014937	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12218737	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12268184	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12413095	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12414462	0.81[AMR][1000 genomes]
rs12415729	0.81[AMR][1000 genomes]
rs12573080	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779127	0.82[EUR][1000 genomes]
rs1339817	0.82[EUR][1000 genomes]
rs1416859	0.82[EUR][1000 genomes]
rs1578217	0.85[EUR][1000 genomes]
rs1891382	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1915477	0.85[EUR][1000 genomes]
rs1976828	0.84[EUR][1000 genomes]
rs2096175	0.92[EUR][1000 genomes]
rs2105344	0.92[EUR][1000 genomes]
rs2153826	0.92[EUR][1000 genomes]
rs2368117	0.82[EUR][1000 genomes]
rs2368121	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3817420	0.81[AMR][1000 genomes]
rs3818956	0.92[EUR][1000 genomes]
rs3824699	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4403709	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4568901	0.88[EUR][1000 genomes]
rs4747545	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4749093	0.88[EUR][1000 genomes]
rs6482523	0.80[EUR][1000 genomes]
rs7084614	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898617	0.89[EUR][1000 genomes]
rs7904196	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7908212	0.84[EUR][1000 genomes]
rs7910068	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923691	0.81[EUR][1000 genomes]
rs982082	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26389200-26392000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26390400-26392000	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26391000-26393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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