Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26465564..26468022-chr10:26468180..26471096,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10741106	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764597	0.86[EUR][1000 genomes]
rs10828948	0.86[EUR][1000 genomes]
rs10828952	0.84[EUR][1000 genomes]
rs10828959	0.87[ASN][1000 genomes]
rs12218737	0.86[EUR][1000 genomes]
rs12573080	0.85[EUR][1000 genomes]
rs1330575	0.84[ASN][1000 genomes]
rs1888252	0.84[ASN][1000 genomes]
rs1891382	0.84[EUR][1000 genomes]
rs1999240	0.84[ASN][1000 genomes]
rs2000253	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2096175	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2105344	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2153826	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3818956	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4568901	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749093	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7898617	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7904196	0.84[EUR][1000 genomes]
rs7908212	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910068	0.84[EUR][1000 genomes]
rs7921616	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26464600-26478000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: