Variant report

Variant	rs13409359
Chromosome Location	chr2:100050740-100050741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100049389..100050894-chr2:100051918..100054292,2	K562	blood:
2	chr2:100049953..100053253-chr2:100105706..100108759,4	MCF-7	breast:
3	chr2:100049753..100054297-chr2:100054339..100060399,6	K562	blood:

Variant related genes	Relation type
ENSG00000135945	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10173883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176205	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179343	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179435	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182492	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10186223	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10207435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123776	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11123778	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11123783	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12162367	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617324	0.85[EUR][1000 genomes]
rs12623835	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989521	0.84[EUR][1000 genomes]
rs12992356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001438	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13017843	0.88[EUR][1000 genomes]
rs13028722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13394927	0.82[ASW][hapmap];0.89[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[EUR][1000 genomes]
rs13401163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402784	0.87[ASW][hapmap];0.89[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13405400	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419448	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420087	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420293	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13426758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427424	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13430662	0.81[ASN][1000 genomes]
rs13430962	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431410	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs13432046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376444	0.85[EUR][1000 genomes]
rs1565054	0.80[EUR][1000 genomes]
rs17022653	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17022663	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1882598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922625	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1922626	0.88[CEU][hapmap]
rs1922627	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1948101	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2309577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309615	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2309616	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28369929	0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs28369949	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382947	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382955	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28745279	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3087399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792151	0.87[ASW][hapmap];0.89[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3828162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4522654	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4850902	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851197	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4851199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4851201	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542877	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6706425	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721031	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744199	0.83[EUR][1000 genomes]
rs6745645	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749029	0.87[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72815074	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815086	0.83[EUR][1000 genomes]
rs72817011	0.83[EUR][1000 genomes]
rs7567230	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7567462	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7569805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579143	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579171	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579999	0.89[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs7581337	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7582085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584022	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584705	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7585532	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7599384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599843	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7606279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9308819	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9308821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308823	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1014604	chr2:99980851-100097884	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1006625	chr2:99984550-100096371	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1014161	chr2:100021040-100063406	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13409359	LIPT1	cis	parietal	SCAN
rs13409359	LIPT1	cis	cerebellum	SCAN
rs13409359	TSGA10	cis	cerebellum	SCAN
rs13409359	SLC9A2	cis	parietal	SCAN
rs13409359	ARID5A	cis	parietal	SCAN
rs13409359	LYG1	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99999400-100056800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:100005800-100062600	Strong transcription	Dnd41	blood
3	chr2:100005800-100066000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:100006000-100050800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:100006000-100051000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:100006000-100081200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr2:100006200-100051400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:100020600-100051400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:100021000-100051800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:100021200-100050800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:100021200-100077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:100021400-100050800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:100022000-100054800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:100022200-100059000	Strong transcription	Liver	Liver
15	chr2:100024400-100051400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:100032600-100078000	Weak transcription	Psoas Muscle	Psoas
17	chr2:100034000-100055200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:100034200-100055000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:100034200-100088800	Weak transcription	Small Intestine	intestine
20	chr2:100036800-100074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:100038200-100055200	Weak transcription	Gastric	stomach
22	chr2:100038200-100063200	Weak transcription	Fetal Intestine Small	intestine
23	chr2:100038200-100073800	Weak transcription	Esophagus	oesophagus
24	chr2:100040000-100055200	Weak transcription	Colonic Mucosa	Colon
25	chr2:100041000-100055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:100041000-100056600	Weak transcription	Fetal Brain Male	brain
27	chr2:100041200-100055200	Weak transcription	Brain Angular Gyrus	brain
28	chr2:100041400-100055000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr2:100041400-100055200	Weak transcription	Aorta	Aorta
30	chr2:100041400-100077800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:100041600-100083400	Weak transcription	Brain Substantia Nigra	brain
32	chr2:100042200-100055000	Weak transcription	Fetal Kidney	kidney
33	chr2:100042600-100051200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:100042800-100065000	Weak transcription	Lung	lung
35	chr2:100043000-100051000	Strong transcription	HUVEC	blood vessel
36	chr2:100044600-100054800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:100044800-100054600	Weak transcription	Hela-S3	cervix
38	chr2:100044800-100055200	Weak transcription	Right Ventricle	heart
39	chr2:100044800-100055400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:100045000-100064200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:100045400-100053600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:100045400-100068200	Weak transcription	Ovary	ovary
43	chr2:100045600-100054400	Weak transcription	Brain Anterior Caudate	brain
44	chr2:100046600-100051200	Strong transcription	K562	blood
45	chr2:100047200-100051000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:100047200-100051000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:100047800-100051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr2:100047800-100063200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr2:100048200-100050800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:100048200-100051000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links