Variant report

Variant	rs1341338
Chromosome Location	chr1:56723186-56723187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1341340	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1954198	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105301	1.00[AMR][1000 genomes]
rs2792784	0.89[AMR][1000 genomes]
rs2793668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3958363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56720000-56724200	Enhancers	Placenta	Placenta
2	chr1:56720600-56724000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56720800-56724000	Enhancers	Adipose Nuclei	Adipose
4	chr1:56720800-56725200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56720800-56725400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:56721000-56723200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56721000-56723600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:56721200-56723800	Enhancers	Fetal Lung	lung
9	chr1:56721200-56725000	Enhancers	Psoas Muscle	Psoas
10	chr1:56721800-56723600	Weak transcription	Left Ventricle	heart
11	chr1:56721800-56723800	Enhancers	Right Ventricle	heart
12	chr1:56721800-56725000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:56721800-56730000	Weak transcription	Ovary	ovary
14	chr1:56722000-56723400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:56722000-56723400	Enhancers	NHDF-Ad	bronchial
16	chr1:56722200-56723600	Weak transcription	Fetal Thymus	thymus
17	chr1:56722200-56725000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:56722200-56725000	Weak transcription	Fetal Heart	heart
19	chr1:56722400-56724400	Enhancers	Right Atrium	heart
20	chr1:56722600-56724400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:56722800-56724000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:56722800-56724000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:56722800-56724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:56722800-56724200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:56723000-56723800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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