Variant report

Variant	rs1417769
Chromosome Location	chr1:56716571-56716572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1341338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1341340	0.82[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1954198	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105301	1.00[AMR][1000 genomes]
rs2792784	0.89[AMR][1000 genomes]
rs2793668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3958363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56714200-56717000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:56714600-56716600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr1:56714600-56717400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:56715400-56716600	Enhancers	Colon Smooth Muscle	Colon
7	chr1:56715400-56716800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56715400-56717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:56716400-56716600	Enhancers	Adipose Nuclei	Adipose
11	chr1:56716400-56716600	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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