Variant report

Variant	rs2792784
Chromosome Location	chr1:56750315-56750316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10888965	0.81[AFR][1000 genomes]
rs1341338	0.89[AMR][1000 genomes]
rs1341340	0.89[AMR][1000 genomes]
rs1417769	0.89[AMR][1000 genomes]
rs1954198	0.89[AMR][1000 genomes]
rs2105301	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2793668	0.89[AMR][1000 genomes]
rs3958363	0.89[AMR][1000 genomes]
rs6588615	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56748400-56759600	Weak transcription	Aorta	Aorta
3	chr1:56750000-56752200	Enhancers	HepG2	liver
4	chr1:56750000-56753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56750200-56750400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:56750200-56750400	Enhancers	Right Atrium	heart
7	chr1:56750200-56750800	Enhancers	A549	lung
8	chr1:56750200-56751000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:56750200-56752000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:56750200-56752000	Enhancers	HSMMtube	muscle
11	chr1:56750200-56752200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56750200-56752200	Enhancers	Left Ventricle	heart
13	chr1:56750200-56752600	Enhancers	Fetal Muscle Leg	muscle
14	chr1:56750200-56752800	Enhancers	Adipose Nuclei	Adipose
15	chr1:56750200-56752800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr1:56750200-56753000	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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