Variant report

Variant	rs1341340
Chromosome Location	chr1:56728650-56728651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1341338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1954198	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105301	1.00[AMR][1000 genomes]
rs2792784	0.89[AMR][1000 genomes]
rs2793668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3958363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516750	chr1:56728246-56731680	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56726400-56732400	Weak transcription	Left Ventricle	heart
4	chr1:56726600-56733400	Weak transcription	Placenta	Placenta
5	chr1:56728000-56731400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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