Variant report

Variant	rs1341352
Chromosome Location	chr1:56767394-56767395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56765576..56767603-chr1:56768909..56770927,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12118755	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12140921	0.81[EUR][1000 genomes]
rs1341339	0.84[CEU][hapmap]
rs1341345	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1417771	0.84[CEU][hapmap]
rs1539058	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1539059	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2793678	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2793685	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2793686	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2793687	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6673309	0.84[CEU][hapmap]
rs947251	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56757800-56786000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:56758000-56768000	Weak transcription	Right Ventricle	heart
3	chr1:56758600-56770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56759800-56767600	Weak transcription	Aorta	Aorta
5	chr1:56759800-56768000	Weak transcription	Left Ventricle	heart
6	chr1:56763600-56767600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56763600-56767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56763800-56768200	Weak transcription	Fetal Heart	heart
9	chr1:56763800-56770400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:56764000-56767800	Weak transcription	Placenta	Placenta
11	chr1:56764000-56773400	Weak transcription	Psoas Muscle	Psoas
12	chr1:56765200-56795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:56765600-56769200	Weak transcription	Ovary	ovary
14	chr1:56765800-56775000	Weak transcription	HepG2	liver
15	chr1:56766200-56767800	Weak transcription	Fetal Intestine Large	intestine
16	chr1:56766200-56767800	Weak transcription	Fetal Intestine Small	intestine
17	chr1:56766600-56769000	Enhancers	HUVEC	blood vessel
18	chr1:56766600-56770000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:56767000-56769800	Enhancers	NHDF-Ad	bronchial
20	chr1:56767200-56768600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:56767200-56769000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:56767200-56769200	Enhancers	Osteobl	bone

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