Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12118755	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12140921	0.81[EUR][1000 genomes]
rs1341339	0.86[CEU][hapmap]
rs1341345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341352	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1417771	0.86[CEU][hapmap]
rs1539058	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539059	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17423986	0.80[EUR][1000 genomes]
rs2793678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673309	0.86[CEU][hapmap]
rs947251	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56753200-56763600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:56757800-56763000	Weak transcription	Fetal Heart	heart
3	chr1:56757800-56763200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:56757800-56764800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56757800-56765200	Weak transcription	Ovary	ovary
6	chr1:56757800-56786000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:56758000-56763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56758000-56768000	Weak transcription	Right Ventricle	heart
9	chr1:56758600-56770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:56759800-56767600	Weak transcription	Aorta	Aorta
11	chr1:56759800-56768000	Weak transcription	Left Ventricle	heart
12	chr1:56760200-56763400	Weak transcription	Psoas Muscle	Psoas
13	chr1:56761600-56763000	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:56761600-56763000	Enhancers	Right Atrium	heart
15	chr1:56761800-56764000	Enhancers	Placenta	Placenta
16	chr1:56761800-56765800	Enhancers	HepG2	liver
17	chr1:56762200-56766200	Enhancers	Fetal Intestine Small	intestine
18	chr1:56762600-56763000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr1:56762600-56764000	Enhancers	Colon Smooth Muscle	Colon
20	chr1:56762800-56763600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:56762800-56763800	Enhancers	Rectal Smooth Muscle	rectum

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