Variant report
| Variant | rs13415518 |
|---|---|
| Chromosome Location | chr2:177789757-177789758 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:177766537..177769341-chr2:177788602..177791267,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1098452 | 1.00[EUR][1000 genomes] |
| rs1153669 | 1.00[EUR][1000 genomes] |
| rs1251031 | 1.00[EUR][1000 genomes] |
| rs1251036 | 1.00[EUR][1000 genomes] |
| rs13383291 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13400152 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13401042 | 1.00[EUR][1000 genomes] |
| rs1513872 | 1.00[EUR][1000 genomes] |
| rs16864739 | 1.00[EUR][1000 genomes] |
| rs1849605 | 1.00[EUR][1000 genomes] |
| rs2203301 | 1.00[EUR][1000 genomes] |
| rs2203302 | 1.00[EUR][1000 genomes] |
| rs57742539 | 1.00[EUR][1000 genomes] |
| rs59784805 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59975233 | 1.00[EUR][1000 genomes] |
| rs60806293 | 1.00[EUR][1000 genomes] |
| rs6433616 | 1.00[EUR][1000 genomes] |
| rs73041476 | 1.00[EUR][1000 genomes] |
| rs73041480 | 1.00[EUR][1000 genomes] |
| rs73041485 | 1.00[EUR][1000 genomes] |
| rs7607833 | 1.00[EUR][1000 genomes] |
| rs840680 | 1.00[EUR][1000 genomes] |
| rs840683 | 1.00[EUR][1000 genomes] |
| rs840688 | 1.00[EUR][1000 genomes] |
| rs840689 | 1.00[EUR][1000 genomes] |
| rs840690 | 1.00[EUR][1000 genomes] |
| rs840692 | 1.00[EUR][1000 genomes] |
| rs840693 | 1.00[EUR][1000 genomes] |
| rs840694 | 1.00[EUR][1000 genomes] |
| rs840695 | 1.00[EUR][1000 genomes] |
| rs840705 | 1.00[EUR][1000 genomes] |
| rs938273 | 1.00[EUR][1000 genomes] |
| rs938274 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875448 | chr2:177760005-177819108 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875449 | chr2:177775612-177835010 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875450 | chr2:177785155-177819108 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177788600-177789800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
