Variant report

Variant	rs73041485
Chromosome Location	chr2:177613320-177613321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177611802..177613808-chr2:177615390..177616937,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1098452	1.00[EUR][1000 genomes]
rs1153669	1.00[EUR][1000 genomes]
rs1251031	1.00[EUR][1000 genomes]
rs1251036	1.00[EUR][1000 genomes]
rs13383291	1.00[EUR][1000 genomes]
rs13400152	1.00[EUR][1000 genomes]
rs13401042	1.00[EUR][1000 genomes]
rs13415518	1.00[EUR][1000 genomes]
rs1513872	1.00[EUR][1000 genomes]
rs16864739	1.00[EUR][1000 genomes]
rs1849605	1.00[EUR][1000 genomes]
rs2203301	1.00[EUR][1000 genomes]
rs2203302	1.00[EUR][1000 genomes]
rs57416198	1.00[EUR][1000 genomes]
rs57736481	1.00[EUR][1000 genomes]
rs57742539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59784805	1.00[EUR][1000 genomes]
rs59975233	1.00[EUR][1000 genomes]
rs60505165	1.00[EUR][1000 genomes]
rs60806293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6433616	1.00[EUR][1000 genomes]
rs73039484	1.00[EUR][1000 genomes]
rs73039488	1.00[EUR][1000 genomes]
rs73039490	1.00[EUR][1000 genomes]
rs73039495	1.00[EUR][1000 genomes]
rs73041409	1.00[EUR][1000 genomes]
rs73041425	1.00[EUR][1000 genomes]
rs73041476	1.00[EUR][1000 genomes]
rs73041480	1.00[EUR][1000 genomes]
rs7607833	1.00[EUR][1000 genomes]
rs840680	1.00[EUR][1000 genomes]
rs840683	1.00[EUR][1000 genomes]
rs840688	1.00[EUR][1000 genomes]
rs840689	1.00[EUR][1000 genomes]
rs840690	1.00[EUR][1000 genomes]
rs840692	1.00[EUR][1000 genomes]
rs840693	1.00[EUR][1000 genomes]
rs840694	1.00[EUR][1000 genomes]
rs840695	1.00[EUR][1000 genomes]
rs840705	1.00[EUR][1000 genomes]
rs938273	1.00[EUR][1000 genomes]
rs938274	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177609800-177613400	Enhancers	Fetal Brain Female	brain
2	chr2:177610000-177614200	Enhancers	Fetal Lung	lung
3	chr2:177610200-177613800	Enhancers	Fetal Brain Male	brain
4	chr2:177610800-177614600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:177611600-177615200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:177611800-177613400	Enhancers	Fetal Stomach	stomach
7	chr2:177611800-177614200	Enhancers	Colon Smooth Muscle	Colon
8	chr2:177612000-177613400	Enhancers	Adipose Nuclei	Adipose
9	chr2:177612000-177613400	Enhancers	Fetal Muscle Leg	muscle
10	chr2:177612000-177620200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:177612200-177615800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:177612200-177616200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:177612400-177614000	Enhancers	Fetal Kidney	kidney
14	chr2:177612400-177615800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:177612400-177616800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:177612400-177620600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:177612800-177613400	Enhancers	Fetal Muscle Trunk	muscle
18	chr2:177612800-177613800	Enhancers	Rectal Smooth Muscle	rectum
19	chr2:177612800-177616000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:177612800-177616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:177612800-177618400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:177613000-177615600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:177613200-177613600	Enhancers	Ovary	ovary
24	chr2:177613200-177618000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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