Variant report
| Variant | rs1849605 |
|---|---|
| Chromosome Location | chr2:177638540-177638541 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs1098452 | 1.00[EUR][1000 genomes] |
| rs1153669 | 1.00[EUR][1000 genomes] |
| rs1251031 | 1.00[EUR][1000 genomes] |
| rs1251036 | 1.00[EUR][1000 genomes] |
| rs13383291 | 1.00[EUR][1000 genomes] |
| rs13400152 | 1.00[EUR][1000 genomes] |
| rs13401042 | 1.00[EUR][1000 genomes] |
| rs13415518 | 1.00[EUR][1000 genomes] |
| rs1513872 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16864739 | 1.00[EUR][1000 genomes] |
| rs2203301 | 0.81[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs2203302 | 1.00[EUR][1000 genomes] |
| rs57416198 | 1.00[EUR][1000 genomes] |
| rs57736481 | 1.00[EUR][1000 genomes] |
| rs57742539 | 1.00[EUR][1000 genomes] |
| rs59784805 | 1.00[EUR][1000 genomes] |
| rs59975233 | 1.00[EUR][1000 genomes] |
| rs60505165 | 1.00[EUR][1000 genomes] |
| rs60806293 | 1.00[EUR][1000 genomes] |
| rs6433612 | 0.84[AFR][1000 genomes] |
| rs6433616 | 1.00[EUR][1000 genomes] |
| rs73039484 | 1.00[EUR][1000 genomes] |
| rs73039488 | 1.00[EUR][1000 genomes] |
| rs73039490 | 1.00[EUR][1000 genomes] |
| rs73039495 | 1.00[EUR][1000 genomes] |
| rs73041409 | 1.00[EUR][1000 genomes] |
| rs73041425 | 1.00[EUR][1000 genomes] |
| rs73041476 | 1.00[EUR][1000 genomes] |
| rs73041480 | 1.00[EUR][1000 genomes] |
| rs73041485 | 1.00[EUR][1000 genomes] |
| rs7607833 | 1.00[EUR][1000 genomes] |
| rs840680 | 1.00[EUR][1000 genomes] |
| rs840683 | 1.00[EUR][1000 genomes] |
| rs840688 | 1.00[EUR][1000 genomes] |
| rs840689 | 1.00[EUR][1000 genomes] |
| rs840690 | 1.00[EUR][1000 genomes] |
| rs840692 | 1.00[EUR][1000 genomes] |
| rs840693 | 1.00[EUR][1000 genomes] |
| rs840694 | 1.00[EUR][1000 genomes] |
| rs840695 | 1.00[EUR][1000 genomes] |
| rs840705 | 1.00[EUR][1000 genomes] |
| rs938273 | 1.00[EUR][1000 genomes] |
| rs938274 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527737 | chr2:177538266-177692572 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583686 | chr2:177538266-177692572 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006500 | chr2:177548521-177707097 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177628800-177655400 | Weak transcription | Ovary | ovary |
| 2 | chr2:177634600-177643800 | Weak transcription | Psoas Muscle | Psoas |
| 3 | chr2:177637600-177639400 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
| 4 | chr2:177637800-177639400 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
