Variant report

Variant	rs1513872
Chromosome Location	chr2:177636014-177636015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1098452	1.00[EUR][1000 genomes]
rs1153669	1.00[EUR][1000 genomes]
rs1251031	1.00[EUR][1000 genomes]
rs1251036	1.00[EUR][1000 genomes]
rs13383291	1.00[EUR][1000 genomes]
rs13400152	1.00[EUR][1000 genomes]
rs13401042	1.00[EUR][1000 genomes]
rs13415518	1.00[EUR][1000 genomes]
rs16864739	1.00[EUR][1000 genomes]
rs1849605	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2203301	1.00[EUR][1000 genomes]
rs2203302	1.00[EUR][1000 genomes]
rs57416198	1.00[EUR][1000 genomes]
rs57736481	1.00[EUR][1000 genomes]
rs57742539	1.00[EUR][1000 genomes]
rs59784805	1.00[EUR][1000 genomes]
rs59975233	1.00[EUR][1000 genomes]
rs60505165	1.00[EUR][1000 genomes]
rs60806293	1.00[EUR][1000 genomes]
rs6433612	1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs6433616	1.00[EUR][1000 genomes]
rs73039484	1.00[EUR][1000 genomes]
rs73039488	1.00[EUR][1000 genomes]
rs73039490	1.00[EUR][1000 genomes]
rs73039495	1.00[EUR][1000 genomes]
rs73041409	1.00[EUR][1000 genomes]
rs73041425	1.00[EUR][1000 genomes]
rs73041476	1.00[EUR][1000 genomes]
rs73041480	1.00[EUR][1000 genomes]
rs73041485	1.00[EUR][1000 genomes]
rs7607833	1.00[EUR][1000 genomes]
rs840680	1.00[EUR][1000 genomes]
rs840683	1.00[EUR][1000 genomes]
rs840688	1.00[EUR][1000 genomes]
rs840689	1.00[EUR][1000 genomes]
rs840690	1.00[EUR][1000 genomes]
rs840692	1.00[EUR][1000 genomes]
rs840693	1.00[EUR][1000 genomes]
rs840694	1.00[EUR][1000 genomes]
rs840695	1.00[EUR][1000 genomes]
rs840705	1.00[EUR][1000 genomes]
rs938273	1.00[EUR][1000 genomes]
rs938274	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177628800-177655400	Weak transcription	Ovary	ovary
2	chr2:177631200-177638400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:177634600-177643800	Weak transcription	Psoas Muscle	Psoas

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