Variant report

Variant	rs13426990
Chromosome Location	chr2:181692950-181692951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12618669	0.81[ASN][1000 genomes]
rs12619585	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13387820	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3923258	0.83[ASN][1000 genomes]
rs4359601	0.80[AMR][1000 genomes]
rs4666608	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666643	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4666946	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4666957	0.80[AMR][1000 genomes]
rs6734821	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9677524	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9677649	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181688800-181694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:181689000-181693400	Weak transcription	NHEK	skin
3	chr2:181689000-181693600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:181689000-181693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:181689000-181693800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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