Variant report

Variant	rs12619585
Chromosome Location	chr2:181718165-181718166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13387820	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13426990	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4359601	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4666608	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4666643	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4666946	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4666957	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61314498	0.85[ASN][1000 genomes]
rs62178161	0.83[ASN][1000 genomes]
rs62178173	0.97[ASN][1000 genomes]
rs6734821	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9677524	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9677649	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181717000-181718200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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