Variant report

Variant	rs61314498
Chromosome Location	chr2:181687288-181687289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11894079	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12463904	0.87[AMR][1000 genomes]
rs12471143	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12619585	0.85[ASN][1000 genomes]
rs4128870	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4290619	0.86[AMR][1000 genomes]
rs4422130	0.81[EUR][1000 genomes]
rs62178161	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62178173	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62178176	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62178210	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62178239	0.85[AMR][1000 genomes]
rs62178240	0.85[AMR][1000 genomes]
rs6756832	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181687200-181687400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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