Variant report

Variant	rs11894079
Chromosome Location	chr2:181736936-181736937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181730611..181732422-chr2:181735699..181737435,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178270	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10189224	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12328545	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12471143	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3922471	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3922472	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128869	1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap]
rs4128870	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290619	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4315481	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4359601	0.91[ASN][1000 genomes]
rs4422130	0.86[EUR][1000 genomes]
rs4436925	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666643	0.92[ASN][1000 genomes]
rs4666946	0.95[ASN][1000 genomes]
rs4666957	0.91[ASN][1000 genomes]
rs61314498	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62178161	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62178173	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62178176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62178210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62178239	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62178240	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6724902	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6730421	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6756832	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9677524	1.00[ASN][1000 genomes]
rs9677649	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963752	chr2:181734234-181756646	Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181736400-181737000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:181736400-181737200	Enhancers	NHDF-Ad	bronchial
3	chr2:181736400-181738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:181736600-181737000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:181736600-181737000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr2:181736600-181737200	Enhancers	HSMMtube	muscle
7	chr2:181736600-181737200	Enhancers	NHLF	lung
8	chr2:181736800-181737200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:181736800-181737200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:181736800-181737200	Enhancers	HSMM	muscle

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