Variant report

Variant	rs9677524
Chromosome Location	chr2:181736508-181736509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181730611..181732422-chr2:181735699..181737435,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10178270	0.91[ASN][1000 genomes]
rs10189224	0.92[ASN][1000 genomes]
rs11894079	1.00[ASN][1000 genomes]
rs12328545	0.91[ASN][1000 genomes]
rs12471143	0.97[ASN][1000 genomes]
rs12619585	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13387820	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13426990	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3922471	0.91[ASN][1000 genomes]
rs3922472	0.89[ASN][1000 genomes]
rs4128869	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs4128870	0.97[ASN][1000 genomes]
rs4290619	0.91[ASN][1000 genomes]
rs4315481	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4359601	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4436925	0.95[ASN][1000 genomes]
rs4666608	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4666643	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4666946	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666957	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62178176	0.81[ASN][1000 genomes]
rs62178210	0.92[ASN][1000 genomes]
rs62178239	0.91[ASN][1000 genomes]
rs62178240	0.91[ASN][1000 genomes]
rs6724902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6730421	0.95[ASN][1000 genomes]
rs6734821	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6756832	1.00[ASN][1000 genomes]
rs9677649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963752	chr2:181734234-181756646	Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9677524	NCKAP1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181736400-181736600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr2:181736400-181737000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:181736400-181737200	Enhancers	NHDF-Ad	bronchial
4	chr2:181736400-181738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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