Variant report

Variant	rs62178239
Chromosome Location	chr2:181771986-181771987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181767652..181770556-chr2:181770717..181772218,2	MCF-7	breast:
2	chr2:181770939..181772876-chr2:181773303..181775237,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBE2E3-2	chr2:181771313-181774666	NONHSAT075852

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10178270	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189224	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11894079	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12328545	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471143	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3922471	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922472	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4128870	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4290619	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4315481	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4359601	1.00[ASN][1000 genomes]
rs4422130	0.84[EUR][1000 genomes]
rs4436925	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666643	0.95[ASN][1000 genomes]
rs4666946	0.97[ASN][1000 genomes]
rs4666957	1.00[ASN][1000 genomes]
rs61314498	0.85[AMR][1000 genomes]
rs62178161	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62178173	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62178176	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62178210	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62178240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6730421	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6756832	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9677524	0.91[ASN][1000 genomes]
rs9677649	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181770000-181772000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:181770600-181772400	Weak transcription	HSMM	muscle
3	chr2:181770800-181772200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:181770800-181772400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:181770800-181775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:181771000-181772000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:181771000-181772600	Weak transcription	Fetal Lung	lung
8	chr2:181771600-181772000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:181771800-181772800	Enhancers	HUES64 Cell Line	embryonic stem cell

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