Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181767652..181770556-chr2:181770717..181772218,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10178270	1.00[ASN][1000 genomes]
rs10189224	0.99[ASN][1000 genomes]
rs11894079	0.91[ASN][1000 genomes]
rs12328545	1.00[ASN][1000 genomes]
rs12471143	0.95[ASN][1000 genomes]
rs12619585	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13387820	0.83[AMR][1000 genomes]
rs13426990	0.80[AMR][1000 genomes]
rs3922471	1.00[ASN][1000 genomes]
rs3922472	0.98[ASN][1000 genomes]
rs4128869	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs4128870	0.95[ASN][1000 genomes]
rs4290619	1.00[ASN][1000 genomes]
rs4315481	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs4359601	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4436925	0.97[ASN][1000 genomes]
rs4666643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666946	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62178210	0.99[ASN][1000 genomes]
rs62178239	1.00[ASN][1000 genomes]
rs62178240	1.00[ASN][1000 genomes]
rs6724902	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6730421	0.97[ASN][1000 genomes]
rs6734821	0.80[AMR][1000 genomes]
rs6756832	0.91[ASN][1000 genomes]
rs9677524	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9677649	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4666957	NCKAP1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181767600-181771000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:181769200-181770800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:181769400-181770800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:181769600-181770600	Enhancers	HSMM	muscle
5	chr2:181769600-181770800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:181769800-181770800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:181769800-181770800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:181770000-181770200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr2:181770000-181770200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr2:181770000-181770400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr2:181770000-181770800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:181770000-181771000	Enhancers	Fetal Lung	lung
13	chr2:181770000-181772000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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