Variant report

Variant	rs13429781
Chromosome Location	chr2:189934457-189934458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189929773..189932181-chr2:189934301..189936938,2	K562	blood:
2	chr2:189929339..189931354-chr2:189932552..189935028,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10165488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10166835	1.00[YRI][hapmap]
rs10166867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10168625	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10172837	1.00[YRI][hapmap]
rs10176299	1.00[AMR][1000 genomes]
rs10180374	1.00[AMR][1000 genomes]
rs10182790	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10182959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10193357	1.00[AMR][1000 genomes]
rs10195176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10196855	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10202897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10203522	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10207418	1.00[YRI][hapmap]
rs10210715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383366	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13383588	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13385646	1.00[YRI][hapmap]
rs13385828	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389070	1.00[AMR][1000 genomes]
rs13392441	1.00[AMR][1000 genomes]
rs13392501	1.00[YRI][hapmap]
rs13395385	1.00[AMR][1000 genomes]
rs13395712	1.00[YRI][hapmap]
rs13396958	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405822	1.00[AFR][1000 genomes]
rs13405825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13407402	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13408124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411571	1.00[AFR][1000 genomes]
rs13411962	1.00[AMR][1000 genomes]
rs13413060	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13413296	1.00[AFR][1000 genomes]
rs13414033	1.00[YRI][hapmap]
rs13416565	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419998	1.00[AMR][1000 genomes]
rs13420752	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421412	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13430867	1.00[AMR][1000 genomes]
rs13431520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712861	1.00[AMR][1000 genomes]
rs28763874	1.00[AMR][1000 genomes]
rs28763875	1.00[AMR][1000 genomes]
rs59459440	1.00[AMR][1000 genomes]
rs6712385	1.00[AMR][1000 genomes]
rs6732228	1.00[AMR][1000 genomes]
rs73981448	1.00[AMR][1000 genomes]
rs73981451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv3074	chr2:189931263-189976124	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189895200-189940800	Strong transcription	HSMM	muscle
2	chr2:189895600-189965200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:189896200-189962400	Weak transcription	Left Ventricle	heart
4	chr2:189897000-189949000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:189898400-189938200	Weak transcription	HMEC	breast
6	chr2:189899000-189939200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:189900800-189964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:189901200-189947400	Weak transcription	Fetal Brain Male	brain
9	chr2:189902600-189937000	Strong transcription	NH-A	brain
10	chr2:189904000-189938200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:189904400-189951000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:189909200-189936200	Weak transcription	Small Intestine	intestine
13	chr2:189912400-189961600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:189914400-189937000	Strong transcription	Adipose Nuclei	Adipose
15	chr2:189914800-189946800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:189915000-189950600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:189915400-189938200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:189915400-189951000	Strong transcription	Osteobl	bone
19	chr2:189916200-189947600	Weak transcription	Spleen	Spleen
20	chr2:189921800-189935400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:189922000-189938000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:189922800-189980800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:189925600-189940600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:189927000-189934800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:189928200-189940800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:189929400-189941000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:189929600-189951400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:189929800-189935400	Weak transcription	Placenta	Placenta
29	chr2:189931200-189935200	Weak transcription	Liver	Liver
30	chr2:189931200-189941200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:189931400-189937000	Strong transcription	NHDF-Ad	bronchial
32	chr2:189931400-189940600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:189931600-189935600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr2:189932400-189937000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr2:189932600-189935000	Strong transcription	Fetal Lung	lung
36	chr2:189932600-189936600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:189932600-189937000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:189933000-189934600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:189933000-189935400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:189933000-189938600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:189933000-189940600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:189933000-189941000	Weak transcription	Ovary	ovary
43	chr2:189933000-189960400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr2:189933000-189980200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr2:189933200-189946800	Weak transcription	Fetal Kidney	kidney
46	chr2:189933800-189935000	Weak transcription	Fetal Stomach	stomach
47	chr2:189933800-189935200	Weak transcription	HSMMtube	muscle
48	chr2:189933800-189935400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:189933800-189935600	Weak transcription	Fetal Intestine Large	intestine
50	chr2:189933800-189939000	Weak transcription	HUVEC	blood vessel

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