Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32264894..32267187-chr2:32274162..32276934,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10084280	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10084410	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169478	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189895	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12712326	1.00[ASN][1000 genomes]
rs13425083	1.00[ASN][1000 genomes]
rs13428933	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13429391	1.00[ASN][1000 genomes]
rs160806	1.00[ASN][1000 genomes]
rs17011642	1.00[ASN][1000 genomes]
rs17011716	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011828	1.00[ASN][1000 genomes]
rs221205	1.00[ASN][1000 genomes]
rs28713298	0.85[AFR][1000 genomes]
rs62134028	0.89[AFR][1000 genomes]
rs62142068	1.00[ASN][1000 genomes]
rs62142082	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142083	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142084	1.00[ASN][1000 genomes]
rs62142085	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142088	1.00[ASN][1000 genomes]
rs62142093	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62142443	1.00[ASN][1000 genomes]
rs62142444	1.00[ASN][1000 genomes]
rs7583597	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7596656	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32275800-32287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:32276800-32277200	Enhancers	Fetal Intestine Small	intestine
3	chr2:32276800-32277200	Flanking Active TSS	HepG2	liver

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