Variant report
| Variant | rs62142093 |
|---|---|
| Chromosome Location | chr2:32268064-32268065 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162961 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10084280 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10084410 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10169478 | 1.00[ASN][1000 genomes] |
| rs10189895 | 1.00[ASN][1000 genomes] |
| rs12712326 | 1.00[ASN][1000 genomes] |
| rs13425083 | 1.00[ASN][1000 genomes] |
| rs13428933 | 1.00[ASN][1000 genomes] |
| rs13429391 | 1.00[ASN][1000 genomes] |
| rs13431616 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs160806 | 1.00[ASN][1000 genomes] |
| rs17011642 | 1.00[ASN][1000 genomes] |
| rs17011716 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17011828 | 1.00[ASN][1000 genomes] |
| rs221205 | 1.00[ASN][1000 genomes] |
| rs62142068 | 1.00[ASN][1000 genomes] |
| rs62142082 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62142083 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62142084 | 1.00[ASN][1000 genomes] |
| rs62142085 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62142088 | 1.00[ASN][1000 genomes] |
| rs62142107 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62142443 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62142444 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7583597 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7596656 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532648 | chr2:31591498-32312698 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv949102 | chr2:32030307-33011548 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:32265600-32268200 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr2:32267800-32268600 | Weak transcription | HepG2 | liver |
