Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13434857	0.92[AFR][1000 genomes]
rs2391528	0.96[AFR][1000 genomes]
rs2391529	0.96[AFR][1000 genomes]
rs2391530	0.96[AFR][1000 genomes]
rs4383633	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593148	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57504424	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57633949	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60074415	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60120540	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61471044	0.89[EUR][1000 genomes]
rs72615878	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72615884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615885	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615886	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615895	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616304	0.89[EUR][1000 genomes]
rs72616306	0.89[EUR][1000 genomes]
rs72616307	0.89[EUR][1000 genomes]
rs72616359	0.89[EUR][1000 genomes]
rs72616370	0.89[EUR][1000 genomes]
rs72616371	0.89[EUR][1000 genomes]
rs72616381	0.89[EUR][1000 genomes]
rs72616384	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2752386	chr4:130849395-130896395	Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130848600-130851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:130851000-130852400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:130851200-130852200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:130851400-130851800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:130851400-130852000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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