Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13435481	0.89[EUR][1000 genomes]
rs4383633	0.89[EUR][1000 genomes]
rs4593148	0.89[EUR][1000 genomes]
rs57504424	0.89[EUR][1000 genomes]
rs57633949	0.89[EUR][1000 genomes]
rs60074415	0.89[EUR][1000 genomes]
rs60120540	0.89[EUR][1000 genomes]
rs61471044	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72615878	0.89[EUR][1000 genomes]
rs72615884	0.89[EUR][1000 genomes]
rs72615885	0.89[EUR][1000 genomes]
rs72615886	0.89[EUR][1000 genomes]
rs72615895	0.89[EUR][1000 genomes]
rs72616304	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72616305	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72616306	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72616307	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72616359	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72616370	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72616371	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72616381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72616382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879936	chr4:130941492-130981535	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130943200-130952600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:130943600-130952600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:130945000-130950400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:130945400-130949800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:130946000-130950400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:130946000-130951800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:130946600-130949800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:130946600-130950600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:130946600-130959600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:130947000-130949800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:130947000-130951600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:130947800-130954000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:130948600-130952800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:130949000-130954200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:130949200-130949600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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