Variant report

Variant	rs72616307
Chromosome Location	chr4:130892656-130892657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13435481	0.89[EUR][1000 genomes]
rs2391539	1.00[AFR][1000 genomes]
rs4383633	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4512011	1.00[AFR][1000 genomes]
rs4593148	0.89[EUR][1000 genomes]
rs57504424	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57633949	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60074415	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60120540	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61471044	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615857	1.00[AFR][1000 genomes]
rs72615861	1.00[AFR][1000 genomes]
rs72615864	1.00[AFR][1000 genomes]
rs72615865	1.00[AFR][1000 genomes]
rs72615878	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72615884	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72615885	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72615886	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72615895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72616305	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616359	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72616370	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616371	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616381	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616382	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616384	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72618852	1.00[AFR][1000 genomes]
rs72618853	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752386	chr4:130849395-130896395	Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
3	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130891800-130892800	Weak transcription	Brain Germinal Matrix	brain
2	chr4:130892000-130892800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:130892200-130892800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:130892400-130893000	Enhancers	Fetal Brain Male	brain
5	chr4:130892600-130893600	Enhancers	Fetal Brain Female	brain

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