Variant report

Variant	rs72616305
Chromosome Location	chr4:130890453-130890454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4383633	0.82[AMR][1000 genomes]
rs57504424	0.82[AMR][1000 genomes]
rs60120540	0.82[AMR][1000 genomes]
rs61471044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615878	0.82[AMR][1000 genomes]
rs72615884	0.82[AMR][1000 genomes]
rs72615885	0.82[AMR][1000 genomes]
rs72615886	0.82[AMR][1000 genomes]
rs72615895	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72616304	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72616306	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616307	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616359	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72616370	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616371	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616381	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616382	0.86[ASN][1000 genomes]
rs72616384	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752386	chr4:130849395-130896395	Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
3	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130887600-130891400	Weak transcription	Fetal Heart	heart
2	chr4:130888800-130890800	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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