Variant report
| Variant | rs72616359 |
|---|---|
| Chromosome Location | chr4:130899261-130899262 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs13435481 | 0.89[EUR][1000 genomes] |
| rs4383633 | 0.89[EUR][1000 genomes] |
| rs4593148 | 0.89[EUR][1000 genomes] |
| rs57504424 | 0.89[EUR][1000 genomes] |
| rs57633949 | 0.89[EUR][1000 genomes] |
| rs60074415 | 0.89[EUR][1000 genomes] |
| rs60120540 | 0.89[EUR][1000 genomes] |
| rs61471044 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72615878 | 0.89[EUR][1000 genomes] |
| rs72615884 | 0.89[EUR][1000 genomes] |
| rs72615885 | 0.89[EUR][1000 genomes] |
| rs72615886 | 0.89[EUR][1000 genomes] |
| rs72615895 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72616304 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72616305 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72616306 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72616307 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72616370 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72616371 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72616381 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72616382 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72616384 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019516 | chr4:130754819-130976202 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017270 | chr4:130853337-130982586 | Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:130899200-130901200 | Enhancers | Dnd41 | blood |
