Variant report

Variant	rs1343609
Chromosome Location	chr13:53700585-53700586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12867491	0.93[ASN][1000 genomes]
rs12869523	0.93[ASN][1000 genomes]
rs12870777	0.93[ASN][1000 genomes]
rs12871248	0.93[ASN][1000 genomes]
rs12874939	0.93[ASN][1000 genomes]
rs12876105	0.93[ASN][1000 genomes]
rs12877599	0.93[ASN][1000 genomes]
rs1343608	0.93[ASN][1000 genomes]
rs2027574	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476028	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2491125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759688	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2759690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806988	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807000	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030659	0.93[ASN][1000 genomes]
rs34031649	0.93[ASN][1000 genomes]
rs34059997	0.93[ASN][1000 genomes]
rs34201111	0.92[ASN][1000 genomes]
rs34531708	0.93[ASN][1000 genomes]
rs34687272	0.93[ASN][1000 genomes]
rs34756826	0.93[ASN][1000 genomes]
rs34902019	0.93[ASN][1000 genomes]
rs35114755	0.93[ASN][1000 genomes]
rs55972529	0.93[ASN][1000 genomes]
rs57273256	0.92[ASN][1000 genomes]
rs59155861	0.88[ASN][1000 genomes]
rs59297590	0.93[ASN][1000 genomes]
rs59960345	0.93[ASN][1000 genomes]
rs60408242	0.93[ASN][1000 genomes]
rs61950079	0.93[ASN][1000 genomes]
rs61950086	0.93[ASN][1000 genomes]
rs6561705	0.93[ASN][1000 genomes]
rs6561706	0.93[ASN][1000 genomes]
rs6561707	0.93[ASN][1000 genomes]
rs71437891	0.92[EUR][1000 genomes]
rs7320513	0.93[ASN][1000 genomes]
rs7998204	0.93[ASN][1000 genomes]
rs9568828	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53696400-53700600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:53696400-53700800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53696400-53700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53696400-53701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:53696600-53703800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:53697800-53709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:53699600-53701800	Enhancers	Fetal Muscle Leg	muscle
8	chr13:53700200-53701400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:53700400-53702000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:53700400-53702200	Enhancers	Fetal Stomach	stomach
11	chr13:53700400-53702600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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