Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53766887..53769388-chr13:53770442..53772910,2	MCF-7	breast:
2	chr13:53768534..53770732-chr13:53773840..53775697,2	K562	blood:

Variant related genes	Relation type
ENSG00000225510	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507575	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12860364	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1322946	0.89[ASN][1000 genomes]
rs1343609	0.98[EUR][1000 genomes]
rs1555549	0.83[ASN][1000 genomes]
rs1909651	0.92[ASN][1000 genomes]
rs2027574	0.98[EUR][1000 genomes]
rs2476028	0.92[EUR][1000 genomes]
rs2491125	0.98[EUR][1000 genomes]
rs2759688	0.94[EUR][1000 genomes]
rs2759690	0.98[EUR][1000 genomes]
rs2806957	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2806988	0.98[EUR][1000 genomes]
rs2806995	0.98[EUR][1000 genomes]
rs2806996	0.98[EUR][1000 genomes]
rs2807000	0.98[EUR][1000 genomes]
rs71437891	0.94[EUR][1000 genomes]
rs7325509	1.00[ASN][1000 genomes]
rs7998385	0.84[ASN][1000 genomes]
rs912053	0.88[ASN][1000 genomes]
rs9563145	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs9568827	0.87[ASN][1000 genomes]
rs995821	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53766000-53771400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:53766200-53770800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53766400-53774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:53766600-53770400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:53766600-53770800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:53767400-53770400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:53767400-53771800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:53767400-53772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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