Variant report

Variant	rs912053
Chromosome Location	chr13:53764479-53764480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53593128..53594726-chr13:53763262..53764959,2	MCF-7	breast:
2	chr13:53762930..53764777-chr13:53766353..53768013,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10507575	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12860364	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12865218	0.89[EUR][1000 genomes]
rs12867491	0.92[EUR][1000 genomes]
rs12868253	0.83[EUR][1000 genomes]
rs12869523	0.92[EUR][1000 genomes]
rs12870777	0.92[EUR][1000 genomes]
rs12871248	0.92[EUR][1000 genomes]
rs12874939	0.92[EUR][1000 genomes]
rs12876105	0.92[EUR][1000 genomes]
rs12876387	0.89[EUR][1000 genomes]
rs12876786	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12877178	0.89[EUR][1000 genomes]
rs12877599	0.92[EUR][1000 genomes]
rs12877758	0.92[EUR][1000 genomes]
rs12877912	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1343608	0.92[EUR][1000 genomes]
rs17054812	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17054937	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1909651	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806932	0.91[ASN][1000 genomes]
rs2806957	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34030659	0.92[EUR][1000 genomes]
rs34031649	0.92[EUR][1000 genomes]
rs34059997	0.92[EUR][1000 genomes]
rs34163916	0.89[EUR][1000 genomes]
rs34201111	0.92[EUR][1000 genomes]
rs34211399	0.89[EUR][1000 genomes]
rs34298498	0.89[EUR][1000 genomes]
rs34330988	0.89[EUR][1000 genomes]
rs34531708	0.92[EUR][1000 genomes]
rs34557321	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34610752	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34642277	0.89[EUR][1000 genomes]
rs34687272	0.92[EUR][1000 genomes]
rs34708622	0.89[EUR][1000 genomes]
rs34756826	0.89[EUR][1000 genomes]
rs34902019	0.92[EUR][1000 genomes]
rs35003538	0.89[EUR][1000 genomes]
rs35007240	0.89[EUR][1000 genomes]
rs35114755	0.92[EUR][1000 genomes]
rs35226075	0.89[EUR][1000 genomes]
rs35340650	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35575822	0.89[EUR][1000 genomes]
rs35625606	0.89[EUR][1000 genomes]
rs35628629	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35666947	0.89[EUR][1000 genomes]
rs35727089	0.89[EUR][1000 genomes]
rs35756659	0.89[EUR][1000 genomes]
rs35765587	0.89[EUR][1000 genomes]
rs35800707	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36044845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55702516	0.86[EUR][1000 genomes]
rs55972529	0.92[EUR][1000 genomes]
rs57273256	0.92[EUR][1000 genomes]
rs57454139	0.89[EUR][1000 genomes]
rs59155861	0.80[EUR][1000 genomes]
rs59297590	0.92[EUR][1000 genomes]
rs59486247	0.88[EUR][1000 genomes]
rs59513810	0.89[EUR][1000 genomes]
rs59960345	0.92[EUR][1000 genomes]
rs60408242	0.92[EUR][1000 genomes]
rs61950074	0.89[EUR][1000 genomes]
rs61950079	0.92[EUR][1000 genomes]
rs61950086	0.92[EUR][1000 genomes]
rs61950134	0.86[EUR][1000 genomes]
rs61950504	0.89[EUR][1000 genomes]
rs61950522	0.89[EUR][1000 genomes]
rs6561705	0.87[EUR][1000 genomes]
rs6561706	0.92[EUR][1000 genomes]
rs6561707	0.92[EUR][1000 genomes]
rs7320513	0.92[EUR][1000 genomes]
rs7325509	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74086489	0.89[EUR][1000 genomes]
rs7998204	0.92[EUR][1000 genomes]
rs7998385	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9563134	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563136	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563137	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563138	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563145	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs9563147	0.86[EUR][1000 genomes]
rs9568814	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568816	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568817	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568820	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568822	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568823	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568824	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568825	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568827	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568828	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[JPT][hapmap];0.88[ASN][1000 genomes]
rs9568834	0.86[EUR][1000 genomes]
rs995821	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53762600-53765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53762600-53767400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:53763400-53767400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:53763600-53765600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:53763800-53766600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:53764000-53765000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:53764000-53765000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:53764000-53766000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:53764000-53767400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:53764200-53764800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:53764200-53765400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:53764200-53766400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:53764400-53764800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:53764400-53766200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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