Variant report

Variant	rs36044845
Chromosome Location	chr13:53739852-53739853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10507575	1.00[AFR][1000 genomes]
rs12860364	1.00[AFR][1000 genomes]
rs12867491	0.83[EUR][1000 genomes]
rs12869523	0.83[EUR][1000 genomes]
rs12870777	0.83[EUR][1000 genomes]
rs12871248	0.83[EUR][1000 genomes]
rs12874939	0.83[EUR][1000 genomes]
rs12876105	0.83[EUR][1000 genomes]
rs12876786	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12877599	0.83[EUR][1000 genomes]
rs12877758	0.83[EUR][1000 genomes]
rs12877912	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1343608	0.83[EUR][1000 genomes]
rs17054812	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17054937	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2806932	0.98[ASN][1000 genomes]
rs34030659	0.83[EUR][1000 genomes]
rs34031649	0.83[EUR][1000 genomes]
rs34059997	0.83[EUR][1000 genomes]
rs34201111	0.83[EUR][1000 genomes]
rs34531708	0.83[EUR][1000 genomes]
rs34557321	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34610752	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34687272	0.83[EUR][1000 genomes]
rs34756826	0.81[EUR][1000 genomes]
rs34902019	0.83[EUR][1000 genomes]
rs35114755	0.83[EUR][1000 genomes]
rs35340650	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35628629	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35800707	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55972529	0.83[EUR][1000 genomes]
rs57273256	0.83[EUR][1000 genomes]
rs59297590	0.83[EUR][1000 genomes]
rs59960345	0.83[EUR][1000 genomes]
rs60408242	0.83[EUR][1000 genomes]
rs61950079	0.83[EUR][1000 genomes]
rs61950086	0.83[EUR][1000 genomes]
rs6561706	0.83[EUR][1000 genomes]
rs6561707	0.83[EUR][1000 genomes]
rs71437891	0.84[ASN][1000 genomes]
rs7320513	0.83[EUR][1000 genomes]
rs7998204	0.83[EUR][1000 genomes]
rs7998385	0.89[ASN][1000 genomes]
rs912053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9563134	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9563136	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563137	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9563138	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568814	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568816	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568817	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568820	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568822	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568823	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568824	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568825	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568827	0.91[ASN][1000 genomes]
rs995821	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53738200-53740200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:53738400-53740000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:53738400-53740600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:53738800-53740000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53738800-53740200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:53739000-53740000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:53739000-53740400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:53739200-53740000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:53739200-53740400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:53739400-53740000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:53739400-53740200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:53739600-53740000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:53739600-53740400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:53739800-53740000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:53739800-53740400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr13:53739800-53740400	Enhancers	Brain Germinal Matrix	brain
19	chr13:53739800-53741000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:53739800-53741000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr13:53739800-53743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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