Variant report
| Variant | rs71437891 |
|---|---|
| Chromosome Location | chr13:53732958-53732959 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs12876786 | 0.83[ASN][1000 genomes] |
| rs12877912 | 0.83[ASN][1000 genomes] |
| rs1343609 | 0.92[EUR][1000 genomes] |
| rs17054812 | 0.82[ASN][1000 genomes] |
| rs17054937 | 0.83[ASN][1000 genomes] |
| rs2027574 | 0.92[EUR][1000 genomes] |
| rs2476028 | 0.86[EUR][1000 genomes] |
| rs2491125 | 0.92[EUR][1000 genomes] |
| rs2759688 | 0.88[EUR][1000 genomes] |
| rs2759690 | 0.92[EUR][1000 genomes] |
| rs2806932 | 0.84[ASN][1000 genomes] |
| rs2806988 | 0.92[EUR][1000 genomes] |
| rs2806995 | 0.92[EUR][1000 genomes] |
| rs2806996 | 0.92[EUR][1000 genomes] |
| rs2807000 | 0.92[EUR][1000 genomes] |
| rs34557321 | 0.83[ASN][1000 genomes] |
| rs34610752 | 0.83[ASN][1000 genomes] |
| rs35340650 | 0.83[ASN][1000 genomes] |
| rs35628629 | 0.83[ASN][1000 genomes] |
| rs35800707 | 0.82[ASN][1000 genomes] |
| rs36044845 | 0.84[ASN][1000 genomes] |
| rs9563134 | 0.84[ASN][1000 genomes] |
| rs9563136 | 0.84[ASN][1000 genomes] |
| rs9563137 | 0.83[ASN][1000 genomes] |
| rs9563138 | 0.83[ASN][1000 genomes] |
| rs9568814 | 0.83[ASN][1000 genomes] |
| rs9568815 | 0.83[ASN][1000 genomes] |
| rs9568816 | 0.83[ASN][1000 genomes] |
| rs9568817 | 0.83[ASN][1000 genomes] |
| rs9568820 | 0.83[ASN][1000 genomes] |
| rs9568821 | 0.83[ASN][1000 genomes] |
| rs9568822 | 0.83[ASN][1000 genomes] |
| rs9568823 | 0.83[ASN][1000 genomes] |
| rs9568824 | 0.83[ASN][1000 genomes] |
| rs9568825 | 0.83[ASN][1000 genomes] |
| rs9568828 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53731400-53741800 | Weak transcription | Fetal Brain Male | brain |
