Variant report

Variant	rs2759690
Chromosome Location	chr13:53712903-53712904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155817444..155818042-chr13:53712458..53713136,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12867491	0.93[ASN][1000 genomes]
rs12869523	0.93[ASN][1000 genomes]
rs12870777	0.93[ASN][1000 genomes]
rs12871248	0.93[ASN][1000 genomes]
rs12874939	0.93[ASN][1000 genomes]
rs12876105	0.93[ASN][1000 genomes]
rs12877599	0.93[ASN][1000 genomes]
rs1343608	0.93[ASN][1000 genomes]
rs1343609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027574	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476028	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2491125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759688	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2806988	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806995	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2807000	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030659	0.93[ASN][1000 genomes]
rs34031649	0.93[ASN][1000 genomes]
rs34059997	0.93[ASN][1000 genomes]
rs34201111	0.92[ASN][1000 genomes]
rs34531708	0.93[ASN][1000 genomes]
rs34687272	0.93[ASN][1000 genomes]
rs34756826	0.93[ASN][1000 genomes]
rs34902019	0.93[ASN][1000 genomes]
rs35114755	0.93[ASN][1000 genomes]
rs55972529	0.93[ASN][1000 genomes]
rs57273256	0.92[ASN][1000 genomes]
rs59155861	0.88[ASN][1000 genomes]
rs59297590	0.93[ASN][1000 genomes]
rs59960345	0.93[ASN][1000 genomes]
rs60408242	0.93[ASN][1000 genomes]
rs61950079	0.93[ASN][1000 genomes]
rs61950086	0.93[ASN][1000 genomes]
rs6561705	0.93[ASN][1000 genomes]
rs6561706	0.93[ASN][1000 genomes]
rs6561707	0.93[ASN][1000 genomes]
rs71437891	0.92[EUR][1000 genomes]
rs7320513	0.93[ASN][1000 genomes]
rs7998204	0.93[ASN][1000 genomes]
rs9568828	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53708800-53715200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:53710000-53715600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:53710200-53713000	Enhancers	Fetal Stomach	stomach
4	chr13:53711200-53717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:53711800-53713200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:53712000-53713000	Enhancers	Fetal Lung	lung
7	chr13:53712200-53713200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:53712200-53713200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:53712400-53713800	Enhancers	Fetal Muscle Leg	muscle
10	chr13:53712600-53713000	Enhancers	Fetal Heart	heart
11	chr13:53712600-53713200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:53712600-53713200	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr13:53712600-53713600	Enhancers	Brain Germinal Matrix	brain
14	chr13:53712600-53713600	Enhancers	Brain Hippocampus Middle	brain
15	chr13:53712800-53713000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:53712800-53713000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr13:53712800-53713200	Active TSS	K562	blood
18	chr13:53712800-53713400	Enhancers	Fetal Brain Male	brain

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