Variant report

Variant	rs34610752
Chromosome Location	chr13:53738726-53738727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs12865218	0.80[EUR][1000 genomes]
rs12867491	0.83[EUR][1000 genomes]
rs12869523	0.83[EUR][1000 genomes]
rs12870777	0.83[EUR][1000 genomes]
rs12871248	0.83[EUR][1000 genomes]
rs12874939	0.83[EUR][1000 genomes]
rs12876105	0.83[EUR][1000 genomes]
rs12876387	0.80[EUR][1000 genomes]
rs12876786	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12877178	0.80[EUR][1000 genomes]
rs12877599	0.83[EUR][1000 genomes]
rs12877758	0.83[EUR][1000 genomes]
rs12877912	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1343608	0.83[EUR][1000 genomes]
rs17054812	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17054937	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806932	0.99[ASN][1000 genomes]
rs34030659	0.83[EUR][1000 genomes]
rs34031649	0.83[EUR][1000 genomes]
rs34059997	0.83[EUR][1000 genomes]
rs34163916	0.80[EUR][1000 genomes]
rs34201111	0.83[EUR][1000 genomes]
rs34211399	0.80[EUR][1000 genomes]
rs34298498	0.80[EUR][1000 genomes]
rs34330988	0.80[EUR][1000 genomes]
rs34531708	0.83[EUR][1000 genomes]
rs34557321	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34642277	0.80[EUR][1000 genomes]
rs34687272	0.83[EUR][1000 genomes]
rs34708622	0.80[EUR][1000 genomes]
rs34756826	0.81[EUR][1000 genomes]
rs34902019	0.83[EUR][1000 genomes]
rs35003538	0.80[EUR][1000 genomes]
rs35007240	0.80[EUR][1000 genomes]
rs35114755	0.83[EUR][1000 genomes]
rs35226075	0.80[EUR][1000 genomes]
rs35340650	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35575822	0.80[EUR][1000 genomes]
rs35625606	0.80[EUR][1000 genomes]
rs35628629	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35666947	0.80[EUR][1000 genomes]
rs35727089	0.80[EUR][1000 genomes]
rs35756659	0.80[EUR][1000 genomes]
rs35765587	0.80[EUR][1000 genomes]
rs35800707	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36044845	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55972529	0.83[EUR][1000 genomes]
rs57273256	0.83[EUR][1000 genomes]
rs57454139	0.80[EUR][1000 genomes]
rs59297590	0.83[EUR][1000 genomes]
rs59513810	0.80[EUR][1000 genomes]
rs59960345	0.83[EUR][1000 genomes]
rs60408242	0.83[EUR][1000 genomes]
rs61950074	0.80[EUR][1000 genomes]
rs61950079	0.83[EUR][1000 genomes]
rs61950086	0.83[EUR][1000 genomes]
rs61950504	0.80[EUR][1000 genomes]
rs61950522	0.80[EUR][1000 genomes]
rs6561706	0.83[EUR][1000 genomes]
rs6561707	0.83[EUR][1000 genomes]
rs71437891	0.83[ASN][1000 genomes]
rs7320513	0.83[EUR][1000 genomes]
rs7325509	0.80[EUR][1000 genomes]
rs74086489	0.80[EUR][1000 genomes]
rs7998204	0.83[EUR][1000 genomes]
rs7998385	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs912053	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9563134	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9563136	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9563137	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563138	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568814	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568815	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568816	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568817	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568820	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568821	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568822	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568823	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568824	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568825	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568827	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53734000-53739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:53734200-53739000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:53735800-53739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53736000-53738800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53736200-53739200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:53738200-53740200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:53738400-53740000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:53738400-53740600	Enhancers	HUES48 Cell Line	embryonic stem cell

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