Variant report

Variant	rs7998385
Chromosome Location	chr13:53763222-53763223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:53542220..53542850-chr13:53763028..53763897,2	MCF-7	breast:
2	chr13:53762930..53764777-chr13:53766353..53768013,2	K562	blood:
3	chr13:53578448..53579351-chr13:53763194..53763965,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10507575	0.94[EUR][1000 genomes]
rs12860364	0.92[EUR][1000 genomes]
rs12865218	0.89[EUR][1000 genomes]
rs12867491	0.92[EUR][1000 genomes]
rs12868253	0.83[EUR][1000 genomes]
rs12869523	0.92[EUR][1000 genomes]
rs12870777	0.92[EUR][1000 genomes]
rs12871248	0.92[EUR][1000 genomes]
rs12874939	0.92[EUR][1000 genomes]
rs12876105	0.92[EUR][1000 genomes]
rs12876387	0.89[EUR][1000 genomes]
rs12876786	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12877178	0.89[EUR][1000 genomes]
rs12877599	0.92[EUR][1000 genomes]
rs12877758	0.92[EUR][1000 genomes]
rs12877912	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1343608	0.92[EUR][1000 genomes]
rs17054812	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17054937	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1909651	0.94[EUR][1000 genomes]
rs2806932	0.87[ASN][1000 genomes]
rs2806957	0.94[EUR][1000 genomes]
rs34030659	0.92[EUR][1000 genomes]
rs34031649	0.92[EUR][1000 genomes]
rs34059997	0.92[EUR][1000 genomes]
rs34163916	0.89[EUR][1000 genomes]
rs34201111	0.92[EUR][1000 genomes]
rs34211399	0.89[EUR][1000 genomes]
rs34298498	0.89[EUR][1000 genomes]
rs34330988	0.89[EUR][1000 genomes]
rs34531708	0.92[EUR][1000 genomes]
rs34557321	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34610752	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34642277	0.89[EUR][1000 genomes]
rs34687272	0.92[EUR][1000 genomes]
rs34708622	0.89[EUR][1000 genomes]
rs34756826	0.89[EUR][1000 genomes]
rs34902019	0.92[EUR][1000 genomes]
rs35003538	0.89[EUR][1000 genomes]
rs35007240	0.89[EUR][1000 genomes]
rs35114755	0.92[EUR][1000 genomes]
rs35226075	0.89[EUR][1000 genomes]
rs35340650	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35575822	0.89[EUR][1000 genomes]
rs35625606	0.89[EUR][1000 genomes]
rs35628629	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35666947	0.89[EUR][1000 genomes]
rs35727089	0.89[EUR][1000 genomes]
rs35756659	0.89[EUR][1000 genomes]
rs35765587	0.89[EUR][1000 genomes]
rs35800707	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36044845	0.89[ASN][1000 genomes]
rs55702516	0.86[EUR][1000 genomes]
rs55972529	0.92[EUR][1000 genomes]
rs57273256	0.92[EUR][1000 genomes]
rs57454139	0.89[EUR][1000 genomes]
rs59155861	0.80[EUR][1000 genomes]
rs59297590	0.92[EUR][1000 genomes]
rs59486247	0.88[EUR][1000 genomes]
rs59513810	0.89[EUR][1000 genomes]
rs59960345	0.92[EUR][1000 genomes]
rs60408242	0.92[EUR][1000 genomes]
rs61950074	0.89[EUR][1000 genomes]
rs61950079	0.92[EUR][1000 genomes]
rs61950086	0.92[EUR][1000 genomes]
rs61950134	0.86[EUR][1000 genomes]
rs61950504	0.89[EUR][1000 genomes]
rs61950522	0.89[EUR][1000 genomes]
rs6561705	0.87[EUR][1000 genomes]
rs6561706	0.92[EUR][1000 genomes]
rs6561707	0.92[EUR][1000 genomes]
rs7320513	0.92[EUR][1000 genomes]
rs7325509	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74086489	0.89[EUR][1000 genomes]
rs7998204	0.92[EUR][1000 genomes]
rs912053	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9563134	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563136	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563137	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563138	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563145	0.86[EUR][1000 genomes]
rs9563147	0.86[EUR][1000 genomes]
rs9568814	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568815	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568816	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568817	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568820	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568821	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568822	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568823	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568824	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568825	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568827	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568828	0.84[ASN][1000 genomes]
rs9568834	0.86[EUR][1000 genomes]
rs995821	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53761800-53764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53762400-53763400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:53762600-53765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53762600-53767400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:53762800-53763600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53763000-53763400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:53763000-53763800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:53763000-53764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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